Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1297 ATGCTTACATGGTGGGGAAAATCATCATCAAAAGAAACCAAGAAGAAAGCAAATAAGGAAAGTTTCTTCGACACACTGCACCGAAAACTTAGAATTTCATCCAAAGGTAAAGTAAGCATTAGATCTGGAGGATCACGTAGACATTGCAATGACACAATTTCAGAGAAGGGAGATCATTCTCCATGTGGATCAAGATCGCCTTCACCTTCCAAAGTGGCAAGGTGTCAAAGTTTTATTGATAGGCCTCATGCTCAGCCACTTCCACTTCCTGGTCTGCATCCTTCAAGTGTAGGCCGAGTAGATTCTGAAATTAGCATATCATCAAAATCAAGATTGGAAAAAGTCTCCAAGCCATTATCGTTTCTTACGCTTCCAACACCTGGATGCATACGTTGTAGGCCAAACCCTGCAGATTTGGATGGAGATATGGTCACTGCTTCAGTCTTTAGTGATTGCTCTGCTGACAGTGATGAGCCAGCAGACTCACACAATCGTAGTCCTCTAGCAATTGACTGTGAGACTGGGACTAGAACTGCTGCTGGCAGTCCTTCCAGCTTAATGCTCAAGGATCAACCACCTGCTGTTTCCCAACTGAATTCAACGGGAGTAAAGAAACCAGGAAATATTCTAAGTAATCATATGTCTTCTACTTCCCCAAAACGTAGGCCTTTACGCAACCATGTTCCAAATCTTCAGGTTCCTCCTCATGGTGCCTTCTATAGTGCTCCTGATAGTTCCTTGTCAAGTCCATCAAGAAGTCCATTGAGGGCATTTGGCACAGATCAGGTGTTGAATTCTGCTTTTTTGGCTGGAAAGCCATATCCAGAGATCAATTTTGTTGGGTCTGGGCATTGCTCTAGTCCAGGTTCAGGTCACAATTCTGGGCACAATTCAATGGGAGGGGACATGTCAGGACCGTTACTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCTCCAGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCAGTCACACCTATTCATCCCAAAGCCGGGGGAACACCCACAGAATCACAGACTCATCGATTGCCTCTTCCTCCTTTGTCAGTTTCTAATTCCTCACTGTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGCTAGAGCAGATAATCCAAACTCTGGCTCACGTTGGAAGAAAGGGAAGCTGCTTGGCAGCGGCTCATTTGGACATGTCTATCTTGGCTTCAATAGTGAAAGAGGCGAAATGTGTGCAGTGAAGGAGGTTACCCTGTTTTCAGATGATCCCAAGTCTATGGAAAGTGCGAAGCAATTTATGCAGGAAATTCATTTATTAAGCCGTTTACAGCATCCAAATATTGTCCAGTATTATGGTTCTGAAACAGTCGATAACAAGCTTTACATATACCTTGAGTATGTATCTGGAGGCTCCATACATAAACTTCTTCGAGAATATGGGCAATTTGGTGAACTAGTTATTCGTAGTTATACTCAACAAATTTTGTCAGGGCTTGCTTATTTGCATGCTAAAAATACTCTCCATAGGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATATAACAGGGCAATCGTGCCCATTGTCATTCAAGGGAACACCTTACTGGATGGCTCCTGAGGTTATAAAAAATTCTAATGGATGCAACCTTGCGGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACCAAACCTCCTTGGTTTCAGTATGAAGGGGTTGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAACCATCCCTGATCATCTCTCAAATGAAGGAAAAGATTTTGTTAGGAAATGTCTTCAGCGTAACCCACATGATCGCCCTTCAGCCAGTGAATTGTTGGACCACCCCTTTGTAAAAAATGCTGCACCTTTGGAAAGACCTATTCCGGCTCCTGAAGCTTTGGACCCTGTTTCTGGGATTACACAGGGAGCAAAAGCTCTGGCTATTGGACAAGGAAAGAATCTTTCTAGCTTGGATTCAGATAGACTTTCTGTTCATTCTTCTAGATTTTTGAAAACTAATCCTCATGAAAGTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTTTCTCCCATCGGAAGCCCACTTTTGAGGTCAAGATCACCACAGCACAGGAATGGGAAAATGTCTCCTTCTCCTATATCTAGCCCTCGGACTGCTTCTGGGGCATCTACACCTCTTGCTGGTGGCAGTGGTGCCATTCCATTTGGTAATCACTCTAAACAGTCCATTTACTTTCAAGAGGGTTTTGGAAGCATTCCCAAGTCCTCAAATGGTGTCTACATGAATGGCCATTCTCATCACGACTCGAATGTTGACATTTTTCGAGGAATGCAAATGGGGTCTCACATTTCACCAGAACTGGTTTCCAGTGAAAATGATGTTTTGGTTAAGCAGTTTGCAAGGCATCCTCATGCAGAGCCATATGATTTTCAGTCGGTCTTGGCAGATCGTGTTGGCCGGCAGCTGCTGGGGGAACATGTTAAGATTAACCCATCCATTGATCTCAGTCCTAACTCGTCTTTGCTTAGCCGGCCAAACGGTTTATGA 2667 0.4406 MLTWWGKSSSKETKKKANKESFFDTLHRKLRISSKGKVSIRSGGSRRHCNDTISEKGDHSPCGSRSPSPSKVARCQSFIDRPHAQPLPLPGLHPSSVGRVDSEISISSKSRLEKVSKPLSFLTLPTPGCIRCRPNPADLDGDMVTASVFSDCSADSDEPADSHNRSPLAIDCETGTRTAAGSPSSLMLKDQPPAVSQLNSTGVKKPGNILSNHMSSTSPKRRPLRNHVPNLQVPPHGAFYSAPDSSLSSPSRSPLRAFGTDQVLNSAFLAGKPYPEINFVGSGHCSSPGSGHNSGHNSMGGDMSGPLLWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPKAGGTPTESQTHRLPLPPLSVSNSSLFSHSNSAATSPSMPRSPARADNPNSGSRWKKGKLLGSGSFGHVYLGFNSERGEMCAVKEVTLFSDDPKSMESAKQFMQEIHLLSRLQHPNIVQYYGSETVDNKLYIYLEYVSGGSIHKLLREYGQFGELVIRSYTQQILSGLAYLHAKNTLHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGTPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWFQYEGVAAMFKIGNSKELPTIPDHLSNEGKDFVRKCLQRNPHDRPSASELLDHPFVKNAAPLERPIPAPEALDPVSGITQGAKALAIGQGKNLSSLDSDRLSVHSSRFLKTNPHESEIHIPRNISCPVSPIGSPLLRSRSPQHRNGKMSPSPISSPRTASGASTPLAGGSGAIPFGNHSKQSIYFQEGFGSIPKSSNGVYMNGHSHHDSNVDIFRGMQMGSHISPELVSSENDVLVKQFARHPHAEPYDFQSVLADRVGRQLLGEHVKINPSIDLSPNSSLLSRPNGL* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1297 888 MobiDBLite consensus disorder prediction 177 223 - -
Gso20g1297 888 SMART serkin_6 400 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1297 888 MobiDBLite consensus disorder prediction 285 402 - -
Gso20g1297 888 Pfam Protein kinase domain 401 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1297 888 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 802 - -
Gso20g1297 888 CDD STKc_MEKK1_plant 399 656 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 34 72 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 152 253 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 1 20 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 735 765 - -
Gso20g1297 888 SUPERFAMILY Protein kinase-like (PK-like) 384 674 IPR011009 -
Gso20g1297 888 MobiDBLite consensus disorder prediction 57 72 - -
Gso20g1297 888 ProSiteProfiles Protein kinase domain profile. 400 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1297 888 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 802 - -
Gso20g1297 888 Gene3D Transferase(Phosphotransferase) domain 1 397 671 - -
Gso20g1297 888 ProSitePatterns Protein kinases ATP-binding region signature. 406 429 IPR017441 GO:0005524
Gso20g1297 888 MobiDBLite consensus disorder prediction 348 394 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 285 300 - -
Gso20g1297 888 MobiDBLite consensus disorder prediction 720 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1297 Gso-Chr20 42999282 43007265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1297 2 877 MAP Kinase Kinase Kinase AT1G63700 57.735 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso20g1297 Pkinase 4.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1297 K20717 - gmx:100797994 1712.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1297 20 42999282 43007265 Gso10g2081 10 47777580 47785511 GST
Gso20g1297 20 42999282 43007265 Gso16g1490 16 35124786 35132517 PCT
Gso20g1297 20 42999282 43007265 Gso9g1108 9 31979501 31987316 PCT