Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1292 ATGCCAGTTGCAAAACTCCCGGCCTCTGGCACAACCGATTTCAGGAAAACAGACGATGGAAATGATTCTTTAGATACAATAATTAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCCGGTGTCAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGGGTTGCCTTTGCTCTCTCCTGTGAAGGTTCATTTACAGAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTACAGAAGACATATACGCATACAGCATCGATTGAAAAAGCTTGATAAGGATTCTGATAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGTGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGGAAACAAGGATTTTCCTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTAAATCTTCCCAAGAGTTATTCAGTATCTTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTATCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTTTTGCTAGAGCAGAATCTGGTGAAGGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAAGAGGAAGCTGCTCAGAAAAGAAAATATGAGATTTTAGAGAGGAAACACCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTCGAAGATGACACAGAAATTAAAGAGAACATACGCAGCACAGGAGAGGATGTTTCACCAACTGAAGCATCTTCTGGTACATGTGACTTTGAAGCACATAATCCAGATATATTTGCGGATAATTCTACTCCTCCACATGTAACTTCTCGCTGCCTAGACAATGATGAAGTTATAGAAGGGGTTACACTGTCAGGGTATGATTTTGACACTGATCAGTATATAGAACGACAGACATCACGAGGACATAATCACCGGCGCATAATGGCTACCAGATGGCAAGGGCTGCCAAAATCTCAATGGGCCATAGCCAATGGTTCGCATCCAGGCCATAATTCTCAAATGTCAAAGCTTGGAGTCATTCAAAAACATGGAACCAACTGTGATCAAAGGGTAGCTCCTATAGTTAATGGTAGTAAGTTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGTGTGGTTTTAAAGGCCAAACTGCAGAAAGAACCAGACAAATGTAAGAATCATGAAGTTTTGATAGGATCTGTATCAGTTTGTCTGGGAAATTGCAGCCATTCAGAAGGGAATTTGGTGGCACCCCAGCGGGACAGCTTGGTAGATAATCTAGCCAAGCAGAATACTGCTCAGGAGAAGCCAGTGAAACATGATTCCTCTCAGGGAAGTAACGGTCGGTTAACAGTTAAACTTTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCTATTGCCACTTCAAAATGGTGGTACAGAAGCTGATGTAATTAATGGAAAATATGACCTAAATTTGTCAGGTCAATGTAGTTTGAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTGGGGACAATTTTTCCCACACTGGAGATTCAGAAAGCTTACGTCTATCCAGCCATGCTGCAAAAGCCTTTCTTGTACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAGTTGTTTGTTACACCTGATTGTCAATCTACTAATGCGGACAGATGTAGCATTATTGCAAATTCAGAGAACCGATTGCCTGCAACCTCTGGAGTTGCCAAATCCAAACCCAAAACGAAGCTTGAGAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAACAACCTAG 1992 0.4147 MPVAKLPASGTTDFRKTDDGNDSLDTIIRQAIGKEPLLSFPRAGVSPVQWIQLLNALDQQGLPLLSPVKVHLQKCNKCSREFCSPINYRRHIRIQHRLKKLDKDSDKNRDLLGAYWDKLSVEEAKEVVSFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPKSSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQNLVKAWLADKDAEALRCQKLLVEEEEAAQKRKYEILERKHQKKLRQKEHKARERLEDDTEIKENIRSTGEDVSPTEASSGTCDFEAHNPDIFADNSTPPHVTSRCLDNDEVIEGVTLSGYDFDTDQYIERQTSRGHNHRRIMATRWQGLPKSQWAIANGSHPGHNSQMSKLGVIQKHGTNCDQRVAPIVNGSKFWSRKPKPETNGVVLKAKLQKEPDKCKNHEVLIGSVSVCLGNCSHSEGNLVAPQRDSLVDNLAKQNTAQEKPVKHDSSQGSNGRLTVKLWRPVSQHGTKDLLPLQNGGTEADVINGKYDLNLSGQCSLRLCSIDGSDIGFGDNFSHTGDSESLRLSSHAAKAFLVQRWKEAISSNHVKLFVTPDCQSTNADRCSIIANSENRLPATSGVAKSKPKTKLEKGMKIKYIPKQKATT* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1292 663 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 662 - -
Gso20g1292 663 ProSitePatterns Zinc finger C2H2 type domain signature. 75 96 IPR013087 -
Gso20g1292 663 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1292 Gso-Chr20 42969564 42975163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1292 19 660 C2H2 Transcription Factor Family AT4G25610 43.318 2.89e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso20g1292 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1292 - - gmx:100789003 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1292 20 42969564 42975163 Gso10g2085 10 47812595 47818112 GST
Gso16g1497 16 35198587 35207609 Gso20g1292 20 42969564 42975163 PCT
Gso9g1116 9 32137619 32140787 Gso20g1292 20 42969564 42975163 PCT
Gso20g1292 20 42969564 42975163 Gso16g1497 16 35198587 35207609 PCT
Gso20g1292 20 42969564 42975163 Gso9g1116 9 32137619 32140787 PCT