Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1291 ATGGGTAGCATCGTGGAAGACGCCGACACAGACACGGTGTATGTGGCGGTCGGAAAGAACGCCGAGAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCCGGCAAAGAAATCTGCCTTCTTCATATTCACCAACCTCACTCTCTCAATTCATTCTCTGACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCGATCAAAGCATTCCAGGAGCATGGAAATCAAAAAGTGCATGAACTTCTAGACCAATACATTCTCACTCTGGTCCCAGCAGGGGTACGAGCCTACAAATTGTTGATTGAGATGGATGATATTGAGAAAGGAATCACAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGCAGACGGATATAACTTGGGCAAACTGGCTAAGCAAGAGTCGGAGAAAGCTATTTTTGTACGTGAACAAGCATTGCTATCCTGTAATACGTGGTTCATTTGCAAGGGTAACGTCATATGTAATAGGGAATATAGTAAGCATACTTCTGACATAGAGACTGGCCCTGCACTGCTGGTGCTCAATCAAAATACAGATGCCAAGCAATCAGAAAAGATCAAATCAGAATCGATTCCTGATGATGCATTGAAATATTTTGATTTTGATGATATGAAAGAGATAAAAAGTGTCCATTCCCACCATTCCTTAAATTCAAAATGGCCGTTTAATAATGTCATGCACAGGTCAAAATTGGCAGATATGATGTTTCATGAGGATGAAGAATTTGAAAGCCAGTGTGCTAAGGAGATCCAAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACGGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAACAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCACTTAGGGAAGTAAAAGTGCTGAGAAGATTTGGGGAAGCAGGTACTTCCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTAATGATTTCGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCATCAGAGTGTATTAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTAGGTCTCTTGTGTATGAGTACATAAACAATGGCAGCCTCGAAAGCCATCTAGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCTAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCCAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAAAGTTTGGCTTATGTGGATCCAGAGTATTTTGTCACTGGCAAGCTTACACCAGAATCGGATGTATATTCTTTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAATTTTAAAGCAATCTTGGACTTTTCATCTGGTGAATGGCCGCTTTTTCAAACCGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGACACGTCACCACATTTGATTTCTAAGAAGCTTCGTCGTGTTCCTTCCCATTTTGTGTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAATTAGATCACACAGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAGCAACAGTGA 2217 0.4168 MGSIVEDADTDTVYVAVGKNAEKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFSDRNLSGYEPKDHAIKAFQEHGNQKVHELLDQYILTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAAADGYNLGKLAKQESEKAIFVREQALLSCNTWFICKGNVICNREYSKHTSDIETGPALLVLNQNTDAKQSEKIKSESIPDDALKYFDFDDMKEIKSVHSHHSLNSKWPFNNVMHRSKLADMMFHEDEEFESQCAKEIQRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANALREVKVLRRFGEAGTSSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGHQSVLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADTSTICNNPNESLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENFKAILDFSSGEWPLFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTSPHLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1291 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 738 IPR013083 -
Gso20g1291 738 Pfam U-box domain 669 737 IPR003613 GO:0004842|GO:0016567
Gso20g1291 738 CDD RING-Ubox_WDSUB1_like 673 714 - -
Gso20g1291 738 ProSiteProfiles Protein kinase domain profile. 386 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1291 738 Gene3D HUPs 12 141 IPR014729 -
Gso20g1291 738 SUPERFAMILY RING/U-box 665 738 - -
Gso20g1291 738 SUPERFAMILY Protein kinase-like (PK-like) 366 647 IPR011009 -
Gso20g1291 738 Coils Coil 332 352 - -
Gso20g1291 738 ProSiteProfiles U-box domain profile. 668 738 IPR003613 GO:0004842|GO:0016567
Gso20g1291 738 ProSitePatterns Protein kinases ATP-binding region signature. 392 413 IPR017441 GO:0005524
Gso20g1291 738 Gene3D Phosphorylase Kinase; domain 1 361 458 - -
Gso20g1291 738 PANTHER OS02G0152300 PROTEIN 8 737 - -
Gso20g1291 738 SMART Ubox_2 672 735 IPR003613 GO:0004842|GO:0016567
Gso20g1291 738 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 130 - -
Gso20g1291 738 Pfam Protein tyrosine and serine/threonine kinase 391 639 IPR001245 GO:0004672|GO:0006468
Gso20g1291 738 Gene3D Transferase(Phosphotransferase) domain 1 459 654 - -
Gso20g1291 738 Coils Coil 262 310 - -
Gso20g1291 738 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 8 737 - -
Gso20g1291 738 CDD STK_N 12 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1291 Gso-Chr20 42955593 42967945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1291 11 737 U-box Gene Family AT2G45910 41.583 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso20g1291 PK_Tyr_Ser-Thr 7.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1291 - - gmx:100787938 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1291 20 42955593 42967945 Gso10g2086 10 47822019 47829366 GST