LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1291	ATGGGTAGCATCGTGGAAGACGCCGACACAGACACGGTGTATGTGGCGGTCGGAAAGAACGCCGAGAAGACGCAGCAACTGTTGCATTGGACGGTTAAGAATTTCTCCGGCAAAGAAATCTGCCTTCTTCATATTCACCAACCTCACTCTCTCAATTCATTCTCTGACAGAAATCTCTCTGGGTATGAACCAAAAGACCATGCGATCAAAGCATTCCAGGAGCATGGAAATCAAAAAGTGCATGAACTTCTAGACCAATACATTCTCACTCTGGTCCCAGCAGGGGTACGAGCCTACAAATTGTTGATTGAGATGGATGATATTGAGAAAGGAATCACAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAATGGGAGCAGCAGCAGCAGACGGATATAACTTGGGCAAACTGGCTAAGCAAGAGTCGGAGAAAGCTATTTTTGTACGTGAACAAGCATTGCTATCCTGTAATACGTGGTTCATTTGCAAGGGTAACGTCATATGTAATAGGGAATATAGTAAGCATACTTCTGACATAGAGACTGGCCCTGCACTGCTGGTGCTCAATCAAAATACAGATGCCAAGCAATCAGAAAAGATCAAATCAGAATCGATTCCTGATGATGCATTGAAATATTTTGATTTTGATGATATGAAAGAGATAAAAAGTGTCCATTCCCACCATTCCTTAAATTCAAAATGGCCGTTTAATAATGTCATGCACAGGTCAAAATTGGCAGATATGATGTTTCATGAGGATGAAGAATTTGAAAGCCAGTGTGCTAAGGAGATCCAAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTACAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCCAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACGGAAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAACAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCACTTAGGGAAGTAAAAGTGCTGAGAAGATTTGGGGAAGCAGGTACTTCCTCTTATCGGGTAGAATTCCCTGCATTTTCTTTTGTGGAGATCAATGAGGCAACTAATGATTTCGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCATCAGAGTGTATTAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTAGGTCTCTTGTGTATGAGTACATAAACAATGGCAGCCTCGAAAGCCATCTAGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCTAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCCAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAAAGTTTGGCTTATGTGGATCCAGAGTATTTTGTCACTGGCAAGCTTACACCAGAATCGGATGTATATTCTTTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCCCTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAATTTTAAAGCAATCTTGGACTTTTCATCTGGTGAATGGCCGCTTTTTCAAACCGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGACACGTCACCACATTTGATTTCTAAGAAGCTTCGTCGTGTTCCTTCCCATTTTGTGTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGAAGAGGCAATAAGAGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAATTAGATCACACAGATTTGGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAGCAACAGTGA	2217	0.4168	MGSIVEDADTDTVYVAVGKNAEKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFSDRNLSGYEPKDHAIKAFQEHGNQKVHELLDQYILTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAAADGYNLGKLAKQESEKAIFVREQALLSCNTWFICKGNVICNREYSKHTSDIETGPALLVLNQNTDAKQSEKIKSESIPDDALKYFDFDDMKEIKSVHSHHSLNSKWPFNNVMHRSKLADMMFHEDEEFESQCAKEIQRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANALREVKVLRRFGEAGTSSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGHQSVLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADTSTICNNPNESLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENFKAILDFSSGEWPLFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTSPHLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ*	739

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso20g1291	738	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	668	738	IPR013083	-
Gso20g1291	738	Pfam	U-box domain	669	737	IPR003613	GO:0004842\|GO:0016567
Gso20g1291	738	CDD	RING-Ubox_WDSUB1_like	673	714	-	-
Gso20g1291	738	ProSiteProfiles	Protein kinase domain profile.	386	651	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso20g1291	738	Gene3D	HUPs	12	141	IPR014729	-
Gso20g1291	738	SUPERFAMILY	RING/U-box	665	738	-	-
Gso20g1291	738	SUPERFAMILY	Protein kinase-like (PK-like)	366	647	IPR011009	-
Gso20g1291	738	Coils	Coil	332	352	-	-
Gso20g1291	738	ProSiteProfiles	U-box domain profile.	668	738	IPR003613	GO:0004842\|GO:0016567
Gso20g1291	738	ProSitePatterns	Protein kinases ATP-binding region signature.	392	413	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1291	Gso-Chr20	42955593	42967945	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1291	11	737	U-box Gene Family	AT2G45910	41.583	0.0	582

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Gso20g1291		PK_Tyr_Ser-Thr	7.8e-37	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1291	-		-	gmx:100787938	1475.3

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso20g1291	20	42955593	42967945	Gso10g2086	10	47822019	47829366	GST

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