Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1289 ATGGTAATGGCGGAAGAAAGTGAAAGTGTGCCCAAGAAGCGTTGGAGTTGCAACGCGAAAGAGGAGGCTCTTCTTGTCCAATGCGCAGAGCTTGTGTTACCGTATCTAACCCAGTCAGAACTCGCCAACGTCTCTTCCACCTGCAAATCCCTCCTCAAACTCTCACGCGCCATCACCCTGCGACGCGCCTCCGACGCTTCCAGAGCCTTCGAGACCCTTCCGGTCCCGTTTCTCAACACCATCGACGCCCACCCCTACGCGCACTTCCTCTACACGCGCTCCCTCCTCCTCCCCTCCCCGCTCCCGCTCCTCCCTCGCCAGCCCTGGGGCTCTTCCGTGATTTCCCCCTCCTCGCCGACTCACCTTCGTGCCGAATCGGTGGGCTTCGTTGATGCCTCTGGCCGGGCCGCGTCGGGCTGCGACTGCGAGGCGTGTGCGGGCCCCACGTGTCCCTGTGCTGGCCTGGATGGCATGGATGACGTGGGCCGAGAGTGTGGGCCGGGCTGCCGCTGCGGGCCCGAGTGCGGGAACCGGTTCACCAGGAATGGGCTTGCGGTAAAGGTGAGGATTGTGAGAGATGAGAAAAAAGGATGGGGCTTGAAAGCGGACCAGTTCATTGCTAAAGGAGAGTTCCTATTTGAATATTCAGGTGAACTCTTGACAACCAAGGAGGCACAAAAGAGACATCAACATTATGATGAGCTGGCTTCACGGGGTGGTTTCTCTTCTGCTCTTTTGGTTGTAAGGGAACATCTTCCTTCTGGGAAGGCTTGTCTGAGATTGAATATCGATGCGACGAGAATAGGAAATGTTGCACGGTTTGTGAATCATTCATGTGACGGTGGTAATTTGAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCGAAAGATATCCAAGTAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGGTTGCCATGCTTTTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCTGAAAACACTTGA 1038 0.5443 MVMAEESESVPKKRWSCNAKEEALLVQCAELVLPYLTQSELANVSSTCKSLLKLSRAITLRRASDASRAFETLPVPFLNTIDAHPYAHFLYTRSLLLPSPLPLLPRQPWGSSVISPSSPTHLRAESVGFVDASGRAASGCDCEACAGPTCPCAGLDGMDDVGRECGPGCRCGPECGNRFTRNGLAVKVRIVRDEKKGWGLKADQFIAKGEFLFEYSGELLTTKEAQKRHQHYDELASRGGFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFASKDIQVDEELTFSYGEIRKRPNGLPCFCNSPSCFGTLPSENT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1289 345 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 334 - -
Gso20g1289 345 ProSiteProfiles Post-SET domain profile. 325 341 IPR003616 -
Gso20g1289 345 Pfam SET domain 197 318 IPR001214 GO:0005515
Gso20g1289 345 ProSiteProfiles SET domain profile. 186 318 IPR001214 GO:0005515
Gso20g1289 345 SUPERFAMILY SET domain 73 338 IPR046341 -
Gso20g1289 345 SMART set_7 186 324 IPR001214 GO:0005515
Gso20g1289 345 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 334 - -
Gso20g1289 345 Gene3D SET domain 44 324 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1289 Gso-Chr20 42946229 42948128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1289 164 340 C2H2 Transcription Factor Family AT2G23740 36.170 5.47e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso20g1289 SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1289 K11433 - gmx:100786871 689.878