Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1286 ATGCCAGAATCTGAGGAAGAAAACCAAGACTATGTTCCCAGGTCAAAGCCATCAGAGGAAGCTGGTGGTGGCTGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCCAACCCCATGTCACCTTTTTTGTTCTCCACTTCCTCTGACCAACCTTACTCTCCCCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAGAATGATGACAACAAAAAACTTTTGCCACCACTTGTTCCTATTTCACCAGTGGAAAATTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGTTACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGAAGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGGCTCTATCAGTATAGAACGGTCTCTCTGATGTACATGTTTTCTGTGGATGGAGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCGGAATGGACTCCCAATGTTTTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACGTTGGCTTTGCCTGTGTTTGAACCTTCAATACAGTCATGTGTTGGTGTATTGGAGTTGATAATGACTTCACAGAAAATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGATCATCCACACACTCAGATTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCACAATTTACCTCTGGCCCAGACATGGATTCCCTGTAAGCATCGAAGTGTTTTGGCCCAAGGTGGTGGTGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGATGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTTTATATTATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACGGCATGTGCTTCTGTTCAAACATTACCCAATTCTACAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAATAACACACATTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCAATAATGAAACAGCATTTCCAGAGTCTTCATATTGCTTCTGGTGTAGAACCTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATCGAAAGAGTTCATACGAGGCTTGAATCTATTCCTATTGCTTCATCTATTAAATCACCACCTAGACCTGATACCTCACCAAACATGGGGGAGGAAGTGCCACAGGATCCATCGGAACAACAAATATTGATGTACTGTAATGACATCAATAATGGAGGGAGTCTTGGTGAAAATGCAGCCAGAAACATTGATCACATGCCCTCCTTAGAGACTAAAAACATAAATAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTAGAAAGATCAACAAGGTTAACCGTTCCCTGTCGAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCAAAAGTCCACTTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCTGCCAGCCTCATTAAGTATTAATCCATCAGAGCCTCAGATGAAAGAGAATGAATTGAATGCCTCCAAAGCATTAGAAACAAACAGTCAGGCTGTAATGGAAGAAGATCGATTGCTAGGAGGCAGGACACCACATCTTGAGAAAGTAATTAACGATAAAGGTAGGCATACTCGAGAGGTTGGGAAAGAACCAAAGAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCAAATGAAAGTTCACCGGTGAAGAATATATTCATTACTTCCAATAATGATCAATGTGCTGGGCTAAAGAGATCACCAGAGTCAACATTGCAGCTAACTACTAATACGCCAAACCGGCCAGCTGCTTACCCTATGCCCGACTTTGTGGCCGCAGAACTTCAAGAGCCATTTGGTGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGACCATATTGGAGGATATGGTTCCAGAAGCTTGTGGGACTAATATTCCAGGTCCAGATTTGTCTCCTAAGCAAAGCATGGGTACTCCTAACAAAGCAGTGACACCTTTTGTAGCTATGAAAGAAATGAAGACAGTGACAATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTTGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGAAATCAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCCGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAAAATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCATGCGAGAGCTCGGGGGAGTGA 2976 0.4251 MPESEEENQDYVPRSKPSEEAGGGCTMDFDLDLETSWPLDHMAFGSNPMSPFLFSTSSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFSCDSNSIAEKPVENDDNKKLLPPLVPISPVENLDGYCVIKERMTQALRYFKELTELNVLAQVWAPVKNGNRYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSIQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPHTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGRCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHGMCFCSNITQFYKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPRITHIHEQKTLLGSILAIMKQHFQSLHIASGVEPEDGSIEIIEATIERVHTRLESIPIASSIKSPPRPDTSPNMGEEVPQDPSEQQILMYCNDINNGGSLGENAARNIDHMPSLETKNINKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPLPIAVGSFPEPSTPNKFSLPASLSINPSEPQMKENELNASKALETNSQAVMEEDRLLGGRTPHLEKVINDKGRHTREVGKEPKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKNIFITSNNDQCAGLKRSPESTLQLTTNTPNRPAAYPMPDFVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAETILEDMVPEACGTNIPGPDLSPKQSMGTPNKAVTPFVAMKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFEIKYLDDDHEWVLIACDADLQECMDVSRSSGSKIIRVLVHDITSNLGSSCESSGE* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1286 991 Pfam RWP-RK domain 586 634 IPR003035 -
Gso20g1286 991 SMART PB1_new 896 978 IPR000270 GO:0005515
Gso20g1286 991 MobiDBLite consensus disorder prediction 717 813 - -
Gso20g1286 991 MobiDBLite consensus disorder prediction 753 812 - -
Gso20g1286 991 CDD PB1_NLP 897 977 IPR034891 -
Gso20g1286 991 SUPERFAMILY CAD & PB1 domains 892 981 - -
Gso20g1286 991 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 990 - -
Gso20g1286 991 Gene3D - 893 977 - -
Gso20g1286 991 MobiDBLite consensus disorder prediction 676 698 - -
Gso20g1286 991 PANTHER PROTEIN NLP8 3 990 IPR045012 GO:0003700
Gso20g1286 991 MobiDBLite consensus disorder prediction 1 27 - -
Gso20g1286 991 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Gso20g1286 991 MobiDBLite consensus disorder prediction 720 752 - -
Gso20g1286 991 MobiDBLite consensus disorder prediction 510 533 - -
Gso20g1286 991 Pfam PB1 domain 896 977 IPR000270 GO:0005515
Gso20g1286 991 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1286 Gso-Chr20 42923530 42928731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1286 261 991 NLP Transcription Factor Family AT4G24020 52.660 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso20g1286 PB1 2.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1286 - - gmx:100785821 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1286 20 42923530 42928731 Gso10g2091 10 47861047 47865877 GST
Gso16g1503 16 35265669 35270338 Gso20g1286 20 42923530 42928731 PCT
Gso9g1122 9 32221347 32225994 Gso20g1286 20 42923530 42928731 PCT
Gso20g1286 20 42923530 42928731 Gso16g1503 16 35265669 35270338 PCT
Gso20g1286 20 42923530 42928731 Gso9g1122 9 32221347 32225994 PCT