Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1278 ATGGTAGTTTGCAATTTCTGTGTACTACCATACTATATTCGGTCTCCCACGTATGAGAACTCGCCACGTTCACGAAAAGCATTCCCTCTTTTGGCGTCCTTTATAAATCTCATGCTCTCACGTTTCCAATGCCGATCACAACAAATCACAATGCAGCAAGCTCCAACCACACTCACCGGATTGCTCCATCGCGTCGCCGGAATATTCCCCTCCCGCCGCGCCGTCTCCGTCTCCGGCAAGTTCGACCTCACGCACTCCCGTCTCCACCACCTCGTCGAACTCGCCGCCTCGGGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTTTATAATAACGTTCTTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCATTGAACGCGGCTTACACCGCCGAGGAGTTCGAGTTTTATCTATCTGACTCAGATTCAAAGCTGTTACTAACCTCAAAAGAAGGAAACGAGCCGGCTCAAGCCGCGGCTTCCAAGCTTAACATTCCGCACGCAACGGCATGGCTCGCGGAAGCCGAGGAGCTGAGTCTCTCTCTGAGTTCCACCGAGTCAGCAATCGACTCGGTCTCCGAAATCGCCAACGACGCTTCCGACGTGGCACTGTTCCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAATTTGGCCTCTTCCGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCTGACTCGACCGTGATCGTTCTCCCGTTGTTCCACGTGCACGGCCTGCTCGCGGCGCTGCTCAGTTCGCTAGCCGCCGGAGCCGCCGTGGTTCTTCCGGAGGCGGGGAGGTTCTCCGCCTCCACGTTCTGGAGCGACATGGCGAGGTACGACGCCACGTGGTACACCGCGGTTCCCACCGTGCACCAGATCGTGCTGGAGCGTCACTTAAAAAACGCGGAACCGGTTTACCCGAAGCTCCGGTTTATCCGGAGCTGTAGCGCGTCGCTTGCACCGGCAATATTGGAACGGTTGGAGGAGGCGTTCGGTGCACCGGTTTTGGAGGCGTATGCGATGACGGAAGCCTCGCATTTGATGTCGTCGAATCCGTTGCCCGAAGATGGGCCTCACCGAGCCGGGTCGGTTGGAAAGCCCGTGGGCCAGGAAATGGTGATATTAAACGAGAATGGTGAGATTCAAAAGAATGAGGTGAAAGGTGAGATTTGTATTAGAGGACCTAACGTGACCAAAGGGTATAAAAACAACCCTGATGCGAATGATTCTGCGTTTCAATTCGGGTGGTTCCACACTGGTGATATCGGGTTTTTTGATTCGGATGGGTATTTGCACCTTGTTGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTTGATGCTGTCCTTCTATCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTACCAGATGACAAATATGGCGAAGAGATAAATTGTGCAATCATCCCAAAAGAAGGATCAAACATTGATGAGGCAGAGGTGCAGAGATTTAGCAAGAAGAACCTTGCAGCCTTCAAAGTCCCTAAAAAGGTCTTCTTCACTGATTCTTTGCCCAAGACTGCAACTGGCAAGATTCTAAGGCGTCTTGTAGCAGAACACTTTGTTTCTCAAACTTGA 1695 0.5363 MVVCNFCVLPYYIRSPTYENSPRSRKAFPLLASFINLMLSRFQCRSQQITMQQAPTTLTGLLHRVAGIFPSRRAVSVSGKFDLTHSRLHHLVELAASGLLSAGIKPGDVVALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNEPAQAAASKLNIPHATAWLAEAEELSLSLSSTESAIDSVSEIANDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGAAVVLPEAGRFSASTFWSDMARYDATWYTAVPTVHQIVLERHLKNAEPVYPKLRFIRSCSASLAPAILERLEEAFGAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVILNENGEIQKNEVKGEICIRGPNVTKGYKNNPDANDSAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQRFSKKNLAAFKVPKKVFFTDSLPKTATGKILRRLVAEHFVSQT* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1278 564 Gene3D - 49 459 IPR042099 -
Gso20g1278 564 CDD FACL_fum10p_like 70 558 IPR045310 GO:0016874
Gso20g1278 564 PANTHER ACYL-COA SYNTHETASE 56 563 - -
Gso20g1278 564 Pfam AMP-binding enzyme 66 466 IPR000873 -
Gso20g1278 564 SUPERFAMILY Acetyl-CoA synthetase-like 47 562 - -
Gso20g1278 564 Pfam AMP-binding enzyme C-terminal domain 475 550 IPR025110 -
Gso20g1278 564 Gene3D - 460 562 IPR045851 -
Gso20g1278 564 PANTHER OXALATE--COA LIGASE-LIKE 56 563 - -
Gso20g1278 564 ProSitePatterns Putative AMP-binding domain signature. 217 228 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1278 Gso-Chr20 42825004 42828892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1278 56 563 Monolignol Biosynthesis Gene Families AT4G05160 31.048 7.36e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1278 K22133 - gmx:100783685 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1278 20 42825004 42828892 Gso20g1278 20 42825004 42828892 ECH
Gso9g1137 9 32677968 32682493 Gso20g1278 20 42825004 42828892 PCT
Gso20g1278 20 42825004 42828892 Gso9g1137 9 32677968 32682493 PCT