Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1269 ATGGGCAAAGCACCTTGTTGTGAGAAACATGGGGTCAGAAGGGGAGCTTGGACACCCGAAGAAGACCAAGCTTTGGTTGACTACATCCAGAAACATGGCCATGGAAGTTGGCGTTCACTCCCCAAACATGCAGGTCTCCTAAGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCAGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATCGTTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTTCTATAGCATCTCAACTACCTGGAAGAACAGACAATGAGATTAAGAACTTCTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCATTCCCAAATAGCAAAACAGCTATGTGTGATTCCTGATCAATCCATTGTCAAGTCCGAATCTCCTTCGACGCGGCACATGGTACAGTGGGAGAGTGTGAGAGTTGAGACAGAGGCAAGGTTGTCATTGGAATCCACAATGCTCAATTCATGGCCAACGAGTAAAACATGCCCTGATCACTTTCTTCAACTTTGGCATTCAGAGGTTGGAAAATCATTTCGCATGATCAAGGGAAAGGAAGAAGGAGTAGTGAGTCAAAGCCTTATCTCACAACCTTCATCTTCATCAAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAAACCAACACTGGAACTAGTAGCTGCATTCCAAAGCTTGAGGATGTGAGCATGGTTCATGAACAAACAAGTAGCTACAAACCAAAGCTTGATGATGACACAGCTGGTTCTGACTCCGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTGAAGCACCTTCTACATATGCCTGATAGTGATATGGGATTCTTGGGACACAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGACTAA 930 0.443 MGKAPCCEKHGVRRGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNFWNTHLKKRLLRSCHSQIAKQLCVIPDQSIVKSESPSTRHMVQWESVRVETEARLSLESTMLNSWPTSKTCPDHFLQLWHSEVGKSFRMIKGKEEGVVSQSLISQPSSSSKLESCSDVSLQVKTNTGTSSCIPKLEDVSMVHEQTSSYKPKLDDDTAGSDSGNYEFLDTSDSALKHLLHMPDSDMGFLGHNDHFQNLLDGTCD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1269 309 CDD SANT 69 112 IPR001005 -
Gso20g1269 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso20g1269 309 SMART sant 66 114 IPR001005 -
Gso20g1269 309 SMART sant 13 63 IPR001005 -
Gso20g1269 309 CDD SANT 16 61 IPR001005 -
Gso20g1269 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 298 - -
Gso20g1269 309 Gene3D - 14 66 - -
Gso20g1269 309 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 298 - -
Gso20g1269 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso20g1269 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso20g1269 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso20g1269 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso20g1269 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso20g1269 309 Gene3D - 69 116 - -
Gso20g1269 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1269 Gso-Chr20 42744123 42747018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1269 1 297 MYB Transcription Factor Family AT3G61250 50.000 8.69e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1269 Myb_DNA-binding 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1269 K09422 - gmx:100782075 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1269 20 42744123 42747018 Gso10g2108 10 48094282 48096906 GST