Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1267 ATGGGGTACCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCTGAAGAAGACAACAAACTCAGAAACCACATCCTTAAACATGGTCATGGCTGTTGGAGTTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGCTGTAGATTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAATTCAGCAAACAGGAAGAGGAGACAATCCTCACCCTTCACCACATGCTAGGCAACAAGTGGTCACGGATATCACAGCATTTGCCTGGAAGGACAGACAATGAGATTAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATGGAATCTCATAACCAAATTAAGTATGCTAGCTCAAGCTCAGATACTATGGACTCTTCACATTCTCTCCAAAATCTTGCAACTCAATGCCCACTGAATTATAACTTCACCAAAGAGGCTTCTCAAAGTTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCACTGGATCATTTAAACTCTGCAAATTCAGTTGACTCTTTGGGTTTGAGGAATGGATTTGATCAAAATTCATCTTTTCATGAAGCTGCAATTCATGACATGTCAGAGGTACCCTTTGGTGGAGAGTATAATAGATGTGTAAGTAACATTTCAGCCCCTGAGATGTTCAATTCACAGCTTAAGTATGGAAATCAAATGGTGGAAAATGGTTACATTCATTGTATGCCTAGGGTTGACTTAAGTAGCAATTTCAGCATAAGCAATGATGCAATAATGTACATATGA 813 0.3973 MGYQPLEKGKPKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSRISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMESHNQIKYASSSSDTMDSSHSLQNLATQCPLNYNFTKEASQSSLPKLLFAEWLSLDHLNSANSVDSLGLRNGFDQNSSFHEAAIHDMSEVPFGGEYNRCVSNISAPEMFNSQLKYGNQMVENGYIHCMPRVDLSSNFSISNDAIMYI* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1267 270 CDD SANT 18 62 IPR001005 -
Gso20g1267 270 PANTHER MYB TRANSCRIPTION FACTOR 155 262 - -
Gso20g1267 270 PANTHER MYB TRANSCRIPTION FACTOR 1 153 - -
Gso20g1267 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso20g1267 270 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso20g1267 270 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso20g1267 270 MobiDBLite consensus disorder prediction 7 21 - -
Gso20g1267 270 PANTHER MYB DOMAIN PROTEIN 55 1 153 - -
Gso20g1267 270 PANTHER MYB DOMAIN PROTEIN 55 155 262 - -
Gso20g1267 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gso20g1267 270 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g1267 270 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso20g1267 270 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso20g1267 270 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gso20g1267 270 CDD SANT 70 113 IPR001005 -
Gso20g1267 270 Gene3D - 15 67 - -
Gso20g1267 270 Gene3D - 69 141 - -
Gso20g1267 270 SMART sant 14 64 IPR001005 -
Gso20g1267 270 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1267 Gso-Chr20 42733008 42735676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1267 8 180 MYB Transcription Factor Family AT3G48920 58.286 1.96e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso20g1267 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1267 K09422 - gmx:778167 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1267 20 42733008 42735676 Gso10g2110 10 48102073 48104830 GST