Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1257 ATGGCTCCGCCGCTCGAACACAACGGCGTTTCCACGAGCGGTGACTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACCATCGACGATGTCATTTCGTGGAACGATTCTGGATCGTCCTTCATCGTCTGGAACACCACCGCTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTTAGAAAAGTTGTACCTGACCGCTGGGAGTTCTCGAACGAGTATTTTCGAAGAGGCGAAAAGCGTCTTCTCTGCGAAATCCAGCGACGGAAGATCCTCTCCGCATCTCCTCCGCCGGCGGGAGCAACTGCCACCGTGGCGGTTCCGTCGCCGCTGCCGCTATCTGCGATCCCGACGGCGAAGCCGATCGTGTCGCCGTCGAACTCCGCGGAGGAGCAGGTGCTTTCGTCGAACTCGTCGCCGGCGAGAGCACCGGTGGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATTCTGTTGACGAAGGAATTGGTGAAGATGAGATCGCTCTGCAACAATATATTCAATCTCATGTCGAATTACGCTAACGCTCAAGCGGACGGTAGTTCCGCGGCGGCGGCGAAGCGGTGCTCCGGCGAGGATGCGGTGGAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGTAAGAAGCGAGCGAGAGAGGAGGAAGGACATGGAGCGAAGTATGATACGGCTTTGAGTCTGCATCAGCCGTTTCATGCGGACGTGAAATCTGAAGCGTTGGATTTACCAGGACGTGGCGAAAATAAAAAAACGCCGTGGCTAAATCAATGTCATAGAGCAAATCAGAGGGTGTGTAATTGA 903 0.5404 MAPPLEHNGVSTSGDSQRSIPTPFLTKTYQLVDDHTIDDVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKILSASPPPAGATATVAVPSPLPLSAIPTAKPIVSPSNSAEEQVLSSNSSPARAPVELLDENERLRKENILLTKELVKMRSLCNNIFNLMSNYANAQADGSSAAAAKRCSGEDAVEEMNPKLFGVAIGKKRAREEEGHGAKYDTALSLHQPFHADVKSEALDLPGRGENKKTPWLNQCHRANQRVCN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1257 300 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1257 300 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Gso20g1257 300 Gene3D - 16 114 IPR036388 -
Gso20g1257 300 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g1257 300 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 218 284 - -
Gso20g1257 300 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 216 - -
Gso20g1257 300 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1257 300 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1257 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 218 284 IPR027725 -
Gso20g1257 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 216 IPR027725 -
Gso20g1257 300 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1257 300 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1257 300 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1257 Gso-Chr20 42661635 42663069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1257 2 300 HSF AT5G62020 49.695 4.06e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso20g1257 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1257 K09419 - gmx:100780987 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1257 20 42661635 42663069 Gso10g2120 10 48185142 48186433 GST
Gso16g1571 16 36240774 36242452 Gso20g1257 20 42661635 42663069 PCT
Gso9g1182 9 34001674 34003359 Gso20g1257 20 42661635 42663069 PCT
Gso20g1257 20 42661635 42663069 Gso16g1571 16 36240774 36242452 PCT
Gso20g1257 20 42661635 42663069 Gso9g1182 9 34001674 34003359 PCT