Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1256 ATGGCTCTACCTTTCAACCTCGTACTCTCATACCTCGTCGTGTTCCACATTTTTTTGTGCACCACTGCAGACCAAAGCAACGACAGGCTTTCCCTCCTTTCCTTCAAAGACGGTCTCCAAAACCCTCACGTGCTAACCTCATGGCACCCTTCAACGCTGCACTGCGACTGGCTCGGCGTCACGTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCCAGCCGCAACCTCAGAGGAGCACTCTCCCCGTCGCTGTTTTCTCTGTCTTCACTCTCTCTCCTCAACCTCTGTGACAACCAGCTCTCCGGCGAGATCCCCAGCGAGCTTGGCGGGCTGCTTCAGCTCCAAACTCTCAGACTCGGCTCCAACTCGCTCGCCGGAAAAATCCCACCGGAGGTGGGACTCCTGACAAAACTCCGCACCCTCGACCTCTCCGGCAACTCCCTCGCCGGAGAAGTGCCGGAGAGTGTTGGAAACTTGACAAAGCTTGAGTTTCTCGACCTGAGTAACAATTTTTTCTCCGGTTCTCTTCCGGTGAGTCTGTTCACCGGAGCGAAGTCTTTGATTTCCGCTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCTCCGGAAATCGGGAACTGGAGGAACATCAGTGCCCTTTACGTGGGGATTAACAAGTTGTCTGGGACTTTGCCTAAGGAAATTGGGTTACTTTCAAAACTTGAAATTTTGTACTCCCCTTCCTGTTCCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTGAAATCGTTGAGTAAACTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCCAAGTTCATTGGGGAGTTGGAGAGTTTGAAAATTTTGGACCTTGTCTTCGCCCAGCTTAATGGGTCGGTGCCGGCTGAGCTTGGGAATTGTAAGAATTTAAGGTCTGTGATGCTCTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAGCTTTCTGAGCTTCCTATGTTAGCCTTTTCTGCTGAGAAGAATCAGCTTCATGGACATTTGCCTTCTTGGCTTGGAAAGTGGAGCAATGTTGATTCTCTTTTGCTCTCTGCTAACCGTTTCTCTGGGATGATTCCACCTGAGCTTGGGAATTGTTCTGCGTTGGAGCACCTCAGTTTGAGCAGTAATTTGTTGACAGGTCCCATTCCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTCTCTGGTGCTATTGATAATGTGTTTGTTAAGTGTAAGAACCTTACCCAGTTGGTTTTGCTGAATAACCGGATTGTTGGTTCTATACCTGAGTATCTTTCTGAGCTTCCCTTGATGGTGCTGGACCTTGATTCCAACAATTTTAGTGGGAAGATGCCTTCTGGTCTGTGGAATTCATCAACCCTGATGGAATTCTCTGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAGTGCGGTTATGCTGGAGAGGCTTGTTCTTAGCAACAATCGACTGACAGGTACTATACCTAAGGAAATTGGGAGTCTCAAAAGTCTTTCAGTTCTTAATTTGAATGGGAATATGCTTGAAGGGAGTATTCCAACTGAGCTTGGTGATTGTACTTCCCTTACTACTATGGACCTTGGAAACAATAAGCTGAACGGGTCTATTCCCGAGAAACTGGTGGAACTAAGCCAATTGCAGTGCCTGGTTCTTTCTCACAATAAACTGTCTGGGTCTATTCCTGCCAAGAAATCTTCGTATTTTCGACAACTTAGCATCCCTGATTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATCTTTCTCACAACAGATTGTCTGGCCCCATACCTGATGAACTTGGGAGCTGTGTGGTGGTTGTGGATCTCTTGGTCAGCAACAACATGCTTTCTGGGAGCATTCCTAGATCACTCTCGCGCTTGACGAATCTTACGACCTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCCCAAGAGCTTGGAGGTGTCCTCAAACTCCAGGGTTTGTATCTGGGACAGAATCAGCTATCAGGTACCATCCCTGAAAGCTTTGGAAAGTTGAGTAGTTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCGGTTAGTTTTCAGAACATGAAGGGGCTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGCGAGCTTCCATCCTCTCTTTCAGGAGTGCAAAGTCTTGTTGGGATTTATGTGCAGAATAACAGGATTTCTGGCCAAGTAGGGGATCTCTTCTCAAACTCCATGACTTGGAGGATTGAGACAGTGAATTTAAGTAACAACTGTTTCAATGGGAACTTGCCGCAGTCTTTGGGAAATCTTTCTTACTTGACAAATTTGGATCTTCATGGAAATATGTTAACTGGAGAGATTCCTTTAGACCTTGGGGATCTAATGCAACTGGAATACTTTGATGTTTCAGGTAACCAACTATCTGGAAGGATTCCAGACAAGTTATGCAGCCTAGTTAATCTGAATTACCTAGATTTGTCTCGAAATAGGTTGGAAGGGCCAATACCGAGAAATGGTATCTGCCAGAACCTATCCAGAGTTAGACTTGCAGGGAACAAAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAAGCATTGGCAGATCAGTATTGTATAATGCATGGCGACTTGCTGTAATTACGGTTACAATCATATTGCTAACTCTAAGCTTTGCTTTTCTTCTGCATAAATGGATTAGCAGGAGGCAAAATGATCCTGAGGAGCTTAAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAAGAACCTTTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACTTTGGTGGATATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACAGTTGCAGTGAAGAAGCTTAGTGAGGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTTGTTGCATTGCTCGGATATTGCTCAATCGGCGAGGAGAAACTCCTTGTTTACGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATCGCAACCGGTGCAGCTCGAGGATTAGCTTTCCTTCATCATGGCTTCACACCCCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTCAGTGGAGATTTTGAGCCAAAAGTTGCAGACTTTGGACTGGCAAGACTTATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGCTACATTCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATTTTGCTTGAACTGGTGACCGGAAAAGAGCCGACGGGACCGGATTTTAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTTGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCAACAGTTCTTGATGCTGACTCGAAACAGATGATGCTTCAAATGCTGCAAATTGCTGGTGTGTGCATATCTGATAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGGAGAGTAG 3807 0.4568 MALPFNLVLSYLVVFHIFLCTTADQSNDRLSLLSFKDGLQNPHVLTSWHPSTLHCDWLGVTCQLGRVTSLSLPSRNLRGALSPSLFSLSSLSLLNLCDNQLSGEIPSELGGLLQLQTLRLGSNSLAGKIPPEVGLLTKLRTLDLSGNSLAGEVPESVGNLTKLEFLDLSNNFFSGSLPVSLFTGAKSLISADISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPKEIGLLSKLEILYSPSCSIEGPLPEEMAKLKSLSKLDLSYNPLRCSIPKFIGELESLKILDLVFAQLNGSVPAELGNCKNLRSVMLSFNSLSGSLPEELSELPMLAFSAEKNQLHGHLPSWLGKWSNVDSLLLSANRFSGMIPPELGNCSALEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGAIDNVFVKCKNLTQLVLLNNRIVGSIPEYLSELPLMVLDLDSNNFSGKMPSGLWNSSTLMEFSAANNRLEGSLPVEIGSAVMLERLVLSNNRLTGTIPKEIGSLKSLSVLNLNGNMLEGSIPTELGDCTSLTTMDLGNNKLNGSIPEKLVELSQLQCLVLSHNKLSGSIPAKKSSYFRQLSIPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPQELGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNMKGLTHLDLSSNELSGELPSSLSGVQSLVGIYVQNNRISGQVGDLFSNSMTWRIETVNLSNNCFNGNLPQSLGNLSYLTNLDLHGNMLTGEIPLDLGDLMQLEYFDVSGNQLSGRIPDKLCSLVNLNYLDLSRNRLEGPIPRNGICQNLSRVRLAGNKNLCGQMLGINCQDKSIGRSVLYNAWRLAVITVTIILLTLSFAFLLHKWISRRQNDPEELKERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFTPHIIHRDVKASNILLSGDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVCQKIKKGQAADVLDPTVLDADSKQMMLQMLQIAGVCISDNPANRPTMLQVHKFLKGMKGE* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1256 1268 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Gso20g1256 1268 SUPERFAMILY L domain-like 27 273 - -
Gso20g1256 1268 SMART LRR_sd22_2 797 818 - -
Gso20g1256 1268 SMART LRR_sd22_2 424 447 - -
Gso20g1256 1268 SMART LRR_sd22_2 257 283 - -
Gso20g1256 1268 SMART LRR_sd22_2 723 749 - -
Gso20g1256 1268 SMART LRR_sd22_2 543 569 - -
Gso20g1256 1268 SMART LRR_sd22_2 845 873 - -
Gso20g1256 1268 SMART LRR_sd22_2 651 674 - -
Gso20g1256 1268 SMART LRR_sd22_2 136 162 - -
Gso20g1256 1268 Gene3D Ribonuclease Inhibitor 183 335 IPR032675 -
Gso20g1256 1268 Gene3D Ribonuclease Inhibitor 593 895 IPR032675 -
Gso20g1256 1268 Gene3D Ribonuclease Inhibitor 336 592 IPR032675 -
Gso20g1256 1268 SMART serkin_6 990 1262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1256 1268 Gene3D Transferase(Phosphotransferase) domain 1 1066 1268 - -
Gso20g1256 1268 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 337 421 - -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 920 1268 - -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 828 865 - -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 775 832 - -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 104 318 - -
Gso20g1256 1268 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 422 755 - -
Gso20g1256 1268 ProSiteProfiles Protein kinase domain profile. 990 1262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1256 1268 SUPERFAMILY L domain-like 592 884 - -
Gso20g1256 1268 PRINTS Leucine-rich repeat signature 726 739 - -
Gso20g1256 1268 PRINTS Leucine-rich repeat signature 845 858 - -
Gso20g1256 1268 ProSitePatterns Protein kinases ATP-binding region signature. 996 1019 IPR017441 GO:0005524
Gso20g1256 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1112 1124 IPR008271 GO:0004672|GO:0006468
Gso20g1256 1268 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515
Gso20g1256 1268 Pfam Leucine rich repeat 652 712 IPR001611 GO:0005515
Gso20g1256 1268 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515
Gso20g1256 1268 Gene3D Phosphorylase Kinase; domain 1 953 1065 - -
Gso20g1256 1268 Pfam Leucine Rich Repeat 726 746 IPR001611 GO:0005515
Gso20g1256 1268 SMART LRR_typ_2 88 112 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 136 159 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 376 400 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 651 675 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 699 722 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 603 627 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 160 184 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 257 281 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 723 747 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 567 594 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 519 543 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 797 821 IPR003591 -
Gso20g1256 1268 SMART LRR_typ_2 845 870 IPR003591 -
Gso20g1256 1268 SUPERFAMILY L domain-like 243 332 - -
Gso20g1256 1268 SUPERFAMILY L domain-like 337 600 - -
Gso20g1256 1268 SUPERFAMILY Protein kinase-like (PK-like) 971 1262 IPR011009 -
Gso20g1256 1268 Pfam Protein tyrosine and serine/threonine kinase 993 1262 IPR001245 GO:0004672|GO:0006468
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 828 865 - -
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 920 1268 - -
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 337 421 - -
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 775 832 - -
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 318 - -
Gso20g1256 1268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 422 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1256 Gso-Chr20 42652842 42657015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1256 23 1263 Receptor kinase-like Gene Family AT5G07280 60.305 0.0 1434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso20g1256 PK_Tyr_Ser-Thr 7.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1256 - - gmx:100780446 2431.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1256 20 42652842 42657015 Gso10g2121 10 48190748 48194968 GST