Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1254 ATGATATTTATTTCTCAATCCATTCCCAGTTCAATGCTAAATTCATCTTCCTTCTCCTACTCAACTCCAAGGAAAATGGAGGGCCCCAGTGAGATAGGTCTCATAGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTACGAGAGCCGTTCTGGAAGTGATAACTTTGAAGGCGCATCTGGTGATGATCAGGATGGTGGTGATGATCAGCCACAGAGGAAGAAGAGATACCACAGACACACTCCTCACCAAATTCAAGAGCTTGAGGCTTTCTTTAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTTTGATCAAGGAAGCCATGTCAAATCCAGTGTGTAACAACTGCGGTGGCCCTGCAATTCCTGGCCAAATTTCATTTGAGGAGCACCAGATTAGAATTGAGAATGCCAGACTAAAGGATGAATTGAACCGTATATGTGTCCTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCATTGACCAGTCCCATGGCCCTCACAACCTCAAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAAGCACTCTTGGCACTCCCTTGCCAATGGGGCTTGATTTGGGAGATGGAGTGTTAGGCACTCAACCTGCAATGCCTGGGGTTAGATCAGCATTGGGTTTGATGGGAAATGAAGTTCAGCTTGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCCATGGAGGAATTACTGAAGATGACTCAGGCAGAGAGCCCTCTTTGGATCAAGAGTTTGGATGGTGAGAAGGAAATCTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGCATTGGTCCAAAACCCGCTGGCTATGTAACTGAAGCTACAAGAGAAACTGGAATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCGTCTATGATTGCTAGAGCTATCAACCTCGATGTTATATCTAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTTCAATTGCTTTCTCCACTAGTCCCCGTTCGTCAAGTAAGATTCATCAGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTAGTTGATGTTTCCATTGAGATAGGTCATGATGCTGCTAATGCACAGCCATCCATTAGCTGTAGAAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCGAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTACGATGAGAATGTTGTCCACCAACTTTATCGCCCGTTGCTAAGTTCTGGTGTTGGATTCGGTGCTCATAGATGGATTGCCACCCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTAATGTCCTCTTCCATTTCAAGTGATAGTCACACAGCATTGAGCCAAGCTGGTAGGAGAAGCATGTTGAAATTGGCACAACGCATGACTAGCAACTTCTGTTCCGGGGTTTGTGCTTCGTCAGCTCGCAAGTGGGACAGCCTTCACATTGGGACTCTTGGTGATGACATGAAAGTGATGACAAGGAAAAACGTGGATGACCCTGGTGAGCCTCCTGGGATTGTGCTCAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGCTGTTCGACTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGTGTTTCTCTTCTCCGTGCTAATGCTGTTAACGCCAACGATAGCAGCATGCTGATTCTACAAGAGACATGGATGGACGCGTCATGCTCAGTGGTGGTATATGCACCTGTTGACGTGCAATCACTGAACGTGGTGATGAGTGGTGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTTGCAATTCTTCCCGATGGCCACTGCAACGACAACGGCTGCAACGGGAGTCTGCAGAAGGGCCGCGGCAGCGACGACGGCAGTGGCGGAAGCCTTCTCACAGTCGGTTTCCAAATTCTGGTGAATAGTCTCCCAACAGCAAAGCTCACAGTGGAGTCAGTGGACACTGTGAATAACCTCATCTCCTGCACCATTCAGAAGATCAAAGCTGCACTAAGAGTTGCATGA 2334 0.4726 MIFISQSIPSSMLNSSSFSYSTPRKMEGPSEIGLIGENFDAGLMGRMRDDEYESRSGSDNFEGASGDDQDGGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLIKEAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICVLANKFLGKPISSLTSPMALTTSNSGLELGIGRNGIGGSSTLGTPLPMGLDLGDGVLGTQPAMPGVRSALGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEIFNHEEYARLFSPCIGPKPAGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIEIGHDAANAQPSISCRRLPSGCIVQDMPNGYSKVTWLEHWEYDENVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDSHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCNDNGCNGSLQKGRGSDDGSGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKAALRVA* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1254 777 SMART HOX_1 77 140 IPR001356 GO:0003677
Gso20g1254 777 Coils Coil 130 165 - -
Gso20g1254 777 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 22 775 - -
Gso20g1254 777 SUPERFAMILY Homeodomain-like 65 136 IPR009057 -
Gso20g1254 777 CDD homeodomain 78 136 IPR001356 GO:0003677
Gso20g1254 777 MobiDBLite consensus disorder prediction 1 33 - -
Gso20g1254 777 ProSiteProfiles START domain profile. 279 515 IPR002913 GO:0008289
Gso20g1254 777 Pfam Homeodomain 79 134 IPR001356 GO:0003677
Gso20g1254 777 Pfam START domain 289 512 IPR002913 GO:0008289
Gso20g1254 777 SUPERFAMILY Bet v1-like 281 512 - -
Gso20g1254 777 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Gso20g1254 777 MobiDBLite consensus disorder prediction 1 24 - -
Gso20g1254 777 SMART START_1 288 512 IPR002913 GO:0008289
Gso20g1254 777 Gene3D - 66 152 - -
Gso20g1254 777 CDD START_ArGLABRA2_like 283 511 - -
Gso20g1254 777 SUPERFAMILY Bet v1-like 540 771 - -
Gso20g1254 777 MobiDBLite consensus disorder prediction 50 86 - -
Gso20g1254 777 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Gso20g1254 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 775 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1254 Gso-Chr20 42594413 42600732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1254 48 774 Homeobox Transcription Factor Family AT3G61150 63.079 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso20g1254 START 6.2e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1254 K09338 - gmx:100785102 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1254 20 42594413 42600732 Gso10g2123 10 48234261 48241078 GST