Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1251 ATGGGTTTTCTCCGGCGAATTTTCGGCGCCAAAAAACCATCCGATTCCAAATCCGCCAAGAAAAGATGGACCTTCCTCAAACACACCGTCAGGAACAAGTCACTCCCGCCGCCACCGCCACCCTCCGCCGTCACTTACTTTGATTCCTCAACTCCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTAGCAGAGGCTGCTCTCGCCGCCGCCCACGCTGCTGCGGAGGTTGTCAGACTCACAAGCGGAGGCGTCTCCGCCACAAGCACCAGGCCCGCCGCTATGGCGGCGCGTGTTGGCAACCTTGAAACCGCCGCCGTTAGGATACAATCGGCGTTCCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCGCTAAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAAACATTGGTGCGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCGGATCCTTCTTTCAACTTCAACTCTTCCCTTTCTCACTATCCTGTCCCTGAAGAATATGAACACCCACCTCGTGGCTTCAGTACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAATGCCAATTCTAGGAACGTTGACTCAGAACGAGCCAGGTTTGATTCCAACTGGTTAAACCGTTGGATGGAATTAGATAACAAGAGCAGCCAAACTGGAGATGCTTCATTGAAAAATGGACGCCCTGATGATGATAAAAGTGACAAGATTCTCGAAGTGGATACTTGGAGGCCACACTTCAAGTCTCACCACAGTAGCAGCTCCTTCCAAGCAGCACATTATTATTTGAGTTCTGATTACAATAATGAGAACTTTGGAGCGGCACATGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGCTTCTCATCAAGGGAGGTGTTGCAGCTAAGCTCATTGAAGTTTCACAAAGGAAAAGAAGAAGCAAGTTCAAGAACTGCTGACAATAGTCCACAAACATTTTCTGCCAATTCTAGAAATGGAAGTGGTGCAAGAAGAGGAGGAGGACCCTTTACACCTACCAGGAGTGAGTGTTCGTGGGGTTTCCTCAGTGGCTACCCAGGTCACCCCAATTACATGGCAAACACTGAATCTTTTAGGGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGGCTGGAGTTTGACAGATACGGTTCCACTAGGAGGCCTGTTCATTTGGTGGGGTCTAATTCAGACCATGATTCAGATTTAAGGAACAAAGTCTTACCTGCCTTTAACCAAATGAACAGAATTGGGAGTAGCAACTTAAGGTGA 1371 0.4938 MGFLRRIFGAKKPSDSKSAKKRWTFLKHTVRNKSLPPPPPPSAVTYFDSSTPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGGVSATSTRPAAMAARVGNLETAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSDPSFNFNSSLSHYPVPEEYEHPPRGFSTKFDGSSILKRCSSNANSRNVDSERARFDSNWLNRWMELDNKSSQTGDASLKNGRPDDDKSDKILEVDTWRPHFKSHHSSSSFQAAHYYLSSDYNNENFGAAHESPSKRSAKALNQSFSSREVLQLSSLKFHKGKEEASSRTADNSPQTFSANSRNGSGARRGGGPFTPTRSECSWGFLSGYPGHPNYMANTESFRAKVRSQSAPRQRLEFDRYGSTRRPVHLVGSNSDHDSDLRNKVLPAFNQMNRIGSSNLR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1251 456 PANTHER CALMODULIN-BINDING PROTEIN 1 454 - -
Gso20g1251 456 MobiDBLite consensus disorder prediction 343 360 - -
Gso20g1251 456 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
Gso20g1251 456 MobiDBLite consensus disorder prediction 334 369 - -
Gso20g1251 456 Gene3D - 105 174 - -
Gso20g1251 456 SMART iq_5 130 151 IPR000048 GO:0005515
Gso20g1251 456 SMART iq_5 107 129 IPR000048 GO:0005515
Gso20g1251 456 PANTHER IQ-DOMAIN 5-RELATED 1 454 - -
Gso20g1251 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 153 IPR027417 -
Gso20g1251 456 Pfam Protein of unknown function (DUF4005) 348 412 IPR025064 -
Gso20g1251 456 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Gso20g1251 456 Pfam IQ calmodulin-binding motif 132 149 IPR000048 GO:0005515
Gso20g1251 456 MobiDBLite consensus disorder prediction 245 264 - -
Gso20g1251 456 ProSiteProfiles IQ motif profile. 132 159 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1251 Gso-Chr20 42568881 42573579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1251 1 413 IQD Protein Family AT5G62070 43.488 7.97e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1251 - - gmx:100783694 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1251 20 42568881 42573579 Gso10g2125 10 48265254 48270123 GST
Gso16g1577 16 36312382 36318141 Gso20g1251 20 42568881 42573579 PCT
Gso9g1187 9 34173855 34179437 Gso20g1251 20 42568881 42573579 PCT
Gso20g1251 20 42568881 42573579 Gso16g1577 16 36312382 36318141 PCT
Gso20g1251 20 42568881 42573579 Gso9g1187 9 34173855 34179437 PCT