Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1244 ATGCAACAAGGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGTTTTGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAAGCCTGCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGAAAGATAGTTAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCTGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCACCGTGATAGAAGCCGTGATGGAAGGCGATCTCCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGTGACCGTAGCCGTAGCAGAAGCCCCCCTAGGAGGGAGAGAGCTAGCCCTGCTTATGGGCGTAGAAGCCTTAGTCCACATAGAAGAGAAAGGGAGGGTTCTGAACCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGTATTTCTCCTTCTCAGAGTCCAGAAGGAAGAGGGAAGAAAAGCCCCCAAAATGGTCATGGTTCTAGCCGTAGTCCTCATGATACTGGGAAGACTAGCCCTGAAAATGGACTTGGCTCCGGAAGTCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCAAATAATATGCCTGATCCCAGGGACAGTCCCAATTATGGCGGTCCTGAAAGTCCCATGCATGAAAGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 1131 0.4766 MQQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRKPASSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRHRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRDRSRSRSPPRRERASPAYGRRSLSPHRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGKKSPQNGHGSSRSPHDTGKTSPENGLGSGSPDEKGNPSPYNGYGGSPNNMPDPRDSPNYGGPESPMHERYRSQSPPAEE* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1244 376 Gene3D - 2 91 IPR012677 -
Gso20g1244 376 Gene3D - 92 182 IPR012677 -
Gso20g1244 376 SUPERFAMILY RNA-binding domain, RBD 7 175 IPR035979 GO:0003676
Gso20g1244 376 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 9 216 - -
Gso20g1244 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 164 IPR000504 GO:0003723
Gso20g1244 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 67 IPR000504 GO:0003723
Gso20g1244 376 CDD RRM2_AtRSp31_like 101 170 - -
Gso20g1244 376 MobiDBLite consensus disorder prediction 286 324 - -
Gso20g1244 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 171 IPR000504 GO:0003723
Gso20g1244 376 PANTHER - 9 216 - -
Gso20g1244 376 MobiDBLite consensus disorder prediction 224 285 - -
Gso20g1244 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 79 IPR000504 GO:0003723
Gso20g1244 376 MobiDBLite consensus disorder prediction 173 211 - -
Gso20g1244 376 CDD RRM1_AtRSp31_like 7 78 - -
Gso20g1244 376 MobiDBLite consensus disorder prediction 173 376 - -
Gso20g1244 376 SMART rrm1_1 101 167 IPR000504 GO:0003723
Gso20g1244 376 SMART rrm1_1 8 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1244 Gso-Chr20 42489198 42493366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1244 99 179 Eukaryotic Initiation Factors Gene Family AT1G49760 32.584 8.42e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1244 K12893 - gmx:100781534 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1244 20 42489198 42493366 Gso20g1244 20 42489198 42493366 ECH