Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1242 ATGGATGGCAACCCTTTTGGAAACGTGCCACCCCCTCCAATACAAGTCCCTGATAACTTGGCTATCTCTTCCTCGTCTTCGCCAACTCCTACGACGTCGTCTCCGTCTCCGACACCCTCCGGAGGCGTCCGGTACCGCGGGACGCGGTGCCGGAGCGGAAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACGAAGCGCATTTGGCTGGGGACTTACCCGACAGCCGAAATGGCTGCGGCGGCTTATGATGTCGCGGCCCTCGCGTTGAAGGGTCCCGACACGCCCCTTAACTTCCCCAATTCGATACTCTCGTACCCGATTCCTGCGTCATTGTCCGCCACGGATATTCGCGCCGCGGCCGCGGCCGCCGCGCAGGCTAGGATCGTGAGGGCGCCGCAGGAGTGTGGGGAAACGGTAAACCCTGATGATGGCGGGGGGCAAGGGATGTCGGAGAGGCGTGAGGAGTACATTGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTCGATGATATGGCCAGGGGAATGCAGGTTAGTCCCCTTAGGATCACTTCCTATTCTTCAGATGATTCGCCTGGGAATTCTGATGGAGATAACCTTTGGAGTTATACCCTTTGA 621 0.5765 MDGNPFGNVPPPPIQVPDNLAISSSSSPTPTTSSPSPTPSGGVRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIRAAAAAAAQARIVRAPQECGETVNPDDGGGQGMSERREEYIDEDELLNMPNLLDDMARGMQVSPLRITSYSSDDSPGNSDGDNLWSYTL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1242 206 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Gso20g1242 206 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Gso20g1242 206 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Gso20g1242 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 204 - -
Gso20g1242 206 MobiDBLite consensus disorder prediction 1 48 - -
Gso20g1242 206 MobiDBLite consensus disorder prediction 18 41 - -
Gso20g1242 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 31 204 - -
Gso20g1242 206 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Gso20g1242 206 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Gso20g1242 206 MobiDBLite consensus disorder prediction 1 17 - -
Gso20g1242 206 MobiDBLite consensus disorder prediction 184 206 - -
Gso20g1242 206 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1242 Gso-Chr20 42468295 42469970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1242 45 204 AP2-EREBP Transcription Factor Family AT5G52020 53.631 5.17e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1242 AP2 8.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1242 - - gmx:100776717 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1242 20 42468295 42469970 Gso20g1242 20 42468295 42469970 ECH