Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1241 ATGTTTTCCATCAATCATTTCTCCGACCCAGATGCCACCTCGCCGGGGTCGGGAGGAAGCTCCCGACCGGCGCTGTCGGACGAGGATTTTTTTCTGGCGGCAAGCAATCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGCGGCGTGAGAAGGCGGGACTCCGGCAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGTCCAGGATTTGGCTCGGGACCTTTCCCACGGCGGAGATGGCGGCGCGTGCGCATGACGTGGCGGCGATCGCGCTGAGGGGAAGGTCAGCCTGCCTCAACTTCGCCGACTCCGCGTCTCGGCTCCCGGTGCCGGCGACGGCGGAGGCCAGGGACATTCAGAAGGCTGCGGCGGAGGCCGCAGAGGCGTTTCGCCCTGGGAAGGATGATGATGCGGTGGCGGAGAGGGTGGCAGCGACGGCGACGGAGCGTGAAGAAGAACAAGAAGAAGGGATGGTGCCGGAGTATCTGAGGAACATGGTGCTCATGTCGCCGACGCATTGCTTCGGGAGTGATGAGTATGGAAGTGCTGACGTGGAATTTGACGATGCTGAAGTTTCTCTGTGGAGTTACTCCATTTAA 624 0.6202 MFSINHFSDPDATSPGSGGSSRPALSDEDFFLAASNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASRLPVPATAEARDIQKAAAEAAEAFRPGKDDDAVAERVAATATEREEEQEEGMVPEYLRNMVLMSPTHCFGSDEYGSADVEFDDAEVSLWSYSI* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1241 207 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 MobiDBLite consensus disorder prediction 1 25 - -
Gso20g1241 207 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 MobiDBLite consensus disorder prediction 1 21 - -
Gso20g1241 207 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Gso20g1241 207 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 13 207 - -
Gso20g1241 207 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Gso20g1241 207 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Gso20g1241 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 207 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1241 Gso-Chr20 42453922 42455192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1241 32 205 AP2-EREBP Transcription Factor Family AT5G51990 55.330 1.84e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso20g1241 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1241 - K09286 gmx:100101894 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1241 20 42453922 42455192 Gso10g2136 10 48385695 48387103 GST
Gso16g1591 16 36511323 36512505 Gso20g1241 20 42453922 42455192 PCT
Gso9g1213 9 34977416 34978612 Gso20g1241 20 42453922 42455192 PCT
Gso20g1241 20 42453922 42455192 Gso16g1591 16 36511323 36512505 PCT
Gso20g1241 20 42453922 42455192 Gso9g1213 9 34977416 34978612 PCT