Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1238 ATGGAAGCGAATCCCACCCACGACGGGGATGACACCTCGGAGACGCCACCGCCGCCCATGGTGGACCCGTCCCCATCTCCGCCGCCTCAAATGAAAGAAGAGGTGATGGACGCGGAGCAAGGCGGTGACACATCTCTTCCGATGACCGTTGTTCCGGCGCATTTGCCGGTGTCGACGGCGGCGGCGAAGAGGCCGTCGAAGGATCGGCACACGAAGGTGGAGGGTCGTGGCCGGAGAATCAGGATGCCGGCGACATGCGCGGCGAGGATCTTCCAGCTGACGCGGGAACTGGGACACAAGTCCGACGGGGAAACAATCCGGTGGTTGCTGGAGCACGCTGAGCCGGCAATCATCGAGGCCACCGGCACCGGCACCATCCCGGCGATCGCGGTCTCGGTCGGCGGCACCCTCAAGATTCCGACATCCTCGGCAGCAAGACCCGAGGGAGAAGTTGACACTCCGAAAAAGCGAAGGAGGAGAGCATCAAACAGCGAATTCATCGACGTGAACGAAAACCAGGTTTCTGTCTCTTCAGGGCTGGCACCAATCGCGCAAAGCGCGTATGGAAGTGGTGTTGGTGGTGGACTTGTTCCTCTGTGGCATGGTAACGCTGCTGCTTCGGGGCCTTTCTTCATGTTTCCGAACGCTTCAAACCCGCCTCAGTATTGGGCCATTCCGGCGACAGCGGCCCCGTTTTTCAACGTCCAGGCCCGGCCCATTTCGGGGTTCGTTTCCGCCTTGCAGATGCAGCATGACAACCACCACTCTTTAAACGGTGCAGCCTCGGATTCCGTTAACTCTTCTTCCACTGTGGGTTCTACTATGAGCACGGTGACTGTTACTACCAGTTCTGGCTCTGGTTCTGCTTCTGGTTCTTCCGCTGCTACAACCACTCAAATGCTCAGGGATTTCTCTTTGGAAATTTATGACAAGAAAGAGCTTCAATTTTTGGGTCAACCACCACCCTCTTCAAAGCCTTGA 981 0.577 MEANPTHDGDDTSETPPPPMVDPSPSPPPQMKEEVMDAEQGGDTSLPMTVVPAHLPVSTAAAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVSVGGTLKIPTSSAARPEGEVDTPKKRRRRASNSEFIDVNENQVSVSSGLAPIAQSAYGSGVGGGLVPLWHGNAAASGPFFMFPNASNPPQYWAIPATAAPFFNVQARPISGFVSALQMQHDNHHSLNGAASDSVNSSSTVGSTMSTVTVTTSSGSGSASGSSAATTTQMLRDFSLEIYDKKELQFLGQPPPSSKP* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1238 326 MobiDBLite consensus disorder prediction 149 163 - -
Gso20g1238 326 Pfam TCP family transcription factor 66 152 IPR017887 -
Gso20g1238 326 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Gso20g1238 326 MobiDBLite consensus disorder prediction 255 295 - -
Gso20g1238 326 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 322 IPR005333 GO:0003700
Gso20g1238 326 MobiDBLite consensus disorder prediction 1 76 - -
Gso20g1238 326 MobiDBLite consensus disorder prediction 16 30 - -
Gso20g1238 326 MobiDBLite consensus disorder prediction 140 163 - -
Gso20g1238 326 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 33 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1238 Gso-Chr20 42405097 42407314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1238 20 317 TCP Transcription Factor Family AT5G51910 51.768 3.16e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso20g1238 TCP 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1238 - - gmx:100819475 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1238 20 42405097 42407314 Gso10g2142 10 48456213 48457683 GST