Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1236 ATGGTGAGGGGAAAGGTTCAACTGAAGAAGATTGAGGATACAACAAGCCGTCAAGTGGCGTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCTTACGAGTTATCCGTTCTTTGTGATGCAGAAGTGGCTGTGATAGTCTTCTCACAGAACGGAAGGCTCTATGAGTTCTCAAGTTCTGACATGACGAAGATTTTGGAACGATACCGAGAATATACCAAAGATGTTCCTGGCAGTAAGTTTGGAGACGATTATATTCAGCAACTGAAGTTAGACTCCGTAAGCATGACAAAGAAGATTGAGCTTCTTGAACATTCTAAAAGGAAGCTGCTGGGACAAAGCGTGAGTTCTTGTTCTTTTGATGAACTCAAAGGAATTGAGGAGCAGCTGCGGACAAGTTTGCAAAGAGTCAGGCAGAGAAAAACTCAACTATATACGGAACAGATTGATCGACTACGATCTCAGTATCAGAGGGCGGAAAGGTCATCCCAGCAGCAATGGCCTAGACACACACAAGCAGAAGCAGAACCCCACTGTTCAAGTAGCCAGAGTTTAGATGTGGATACAGAACTATTTATTGGACTTCCGAAGCAGCAGTGCTGA 603 0.4395 MVRGKVQLKKIEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSSSDMTKILERYREYTKDVPGSKFGDDYIQQLKLDSVSMTKKIELLEHSKRKLLGQSVSSCSFDELKGIEEQLRTSLQRVRQRKTQLYTEQIDRLRSQYQRAERSSQQQWPRHTQAEAEPHCSSSQSLDVDTELFIGLPKQQC* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1236 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 Coils Coil 142 162 - -
Gso20g1236 200 MobiDBLite consensus disorder prediction 158 183 - -
Gso20g1236 200 PANTHER MADS-BOX PROTEIN SOC1 1 196 - -
Gso20g1236 200 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Gso20g1236 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso20g1236 200 Pfam K-box region 87 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g1236 200 PANTHER MADS BOX PROTEIN 1 196 - -
Gso20g1236 200 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Gso20g1236 200 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Gso20g1236 200 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g1236 200 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1236 Gso-Chr20 42370749 42384391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1236 1 144 MADS-box Gene Family AT5G62165 62.759 8.31e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso20g1236 K-box 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1236 - - gmx:100818935 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1236 20 42370749 42384391 Gso20g1236 20 42370749 42384391 ECH