Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1231 ATGGGAAGAGGTAAGGTGGTTCTGGAGAGAATACAGAATAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTGAAGAAAGCCTTCGAGCTATCTGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGCCGTGGCAAGCTTTTTCAATACAGTAGCACTGACATTAACAGAATCATTGATAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGACGTAACTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGATATTAAGAGTCAAGCATGAATCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAGCTGGATAGAACGCTTGGACAAGCTCGGAAGCACCTAACGCAGAAGCTGATATCACGAATTGACGAATTACATGGAAAGGTGCACAACCTGGAGCAGGTTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGCACCCAGACTTGTGAAGGTTCTGCTAATAGTCATATTCGGCTGCAAGATGCACAAGTCAATCAATTTGAATCTGAAACAACAGGATATATTTTTTGTTGCAGTTCGTTTCGGCTTCAGCAAGAGCAGACTACTGCTTCAAAAGGAAAAGAAAGCAGTCACAATATAAATATATTGCGTCTTTGA 711 0.4205 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIDKYRQCCFNMSQTGDVTEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLGQARKHLTQKLISRIDELHGKVHNLEQVNKHLESQERGKCTQTCEGSANSHIRLQDAQVNQFESETTGYIFCCSSFRLQQEQTTASKGKESSHNINILRL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1231 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g1231 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 PANTHER MADS BOX PROTEIN 1 235 - -
Gso20g1231 236 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Gso20g1231 236 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso20g1231 236 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gso20g1231 236 Coils Coil 151 171 - -
Gso20g1231 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Gso20g1231 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso20g1231 236 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Gso20g1231 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1231 Gso-Chr20 42324025 42330891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1231 1 180 MADS-box Gene Family AT3G02310 49.724 2.38e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso20g1231 K-box 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1231 K09264 - gmx:100778860 447.973