Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1226 ATGCAGTTTAAATGTTTCAGTTGTTTTCTTTGTGAAAAAGAGCAATCAGAAATACAGAATGCCAACAACAAGAAAAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAGCAATTTTCATCAAGATAACAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCATCGAGATAGCAGTGAAGCGCTTGAAGACTATGACAGCAAAGGCAGAGATGGAGTTTGCAGTTGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATTTGTTAGGCTTGCGTGGATTCTATGCTGGAGGCGATGAAAGGTTGATTGTCTATGATTACATGCCTAATCACAGCTTGCTCACCCATTTGCATGGTCAACTTGCCACGGATTGTTTGCTAGATTGGCCTAGAAGAATGACCATAGCAATTGGAGCTGCAGAAGGCTTAGGGTATTTGCACCATGAAGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTCTTAGACACTGAATTTGAAGCCAAGGTTGCTGATTTTGGTTTTGCTAAGTTGATACCAGAGGGTGTAAGCCATCTCACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCGCCAGAGTATGCTATGTGGGGGAAGGTTTCTGGGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTTTGAGTGCTAAGAAACCAATTGAGAAACTCCCTGGCGGAGTGAAAAGGGACATAGTTCAATGGGTCACACCACATGTCCAAAAGGGTAACTTCCTTCATATTGCTGATCCAAAGTTGAAGGGGCATTTTGATTTAGAGCAATTGAAATCTGTGGTCATGATAGCTATGAGGTGCACAGATAATAGCCCAGAGAAGAGGCCTAGCATGGCAGAGGTGGTGGAGTGGCTCAAGGGTGGCATGGGGAGAAGAAAAAAAGAGATTCCATATTTGAGTTACAAGACTGGAGATGACAAATAA 1020 0.4245 MQFKCFSCFLCEKEQSEIQNANNKKNRDYPWEIYTLKELLRATSNFHQDNKIGEGGFGSVYWGRTSKGIEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLATDCLLDWPRRMTIAIGAAEGLGYLHHEANPHIIHRDIKASNVLLDTEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSGSCDVYSFGILLLEILSAKKPIEKLPGGVKRDIVQWVTPHVQKGNFLHIADPKLKGHFDLEQLKSVVMIAMRCTDNSPEKRPSMAEVVEWLKGGMGRRKKEIPYLSYKTGDDK* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1226 339 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1226 339 PANTHER OS01G0253100 PROTEIN 5 334 IPR045271 GO:0004714|GO:0006468
Gso20g1226 339 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 334 - -
Gso20g1226 339 PIRSF ILK 16 324 - -
Gso20g1226 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Gso20g1226 339 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Gso20g1226 339 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1226 339 Gene3D Phosphorylase Kinase; domain 1 8 121 - -
Gso20g1226 339 SUPERFAMILY Protein kinase-like (PK-like) 27 322 IPR011009 -
Gso20g1226 339 ProSiteProfiles Protein kinase domain profile. 46 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1226 339 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1226 Gso-Chr20 42249330 42251356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1226 27 319 Receptor kinase-like Gene Family AT5G45780 45.151 6.25e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso20g1226 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1226 - - gmx:100815397 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1226 20 42249330 42251356 Gso10g2152 10 48560047 48562043 GST
Gso16g1611 16 36745044 36748319 Gso20g1226 20 42249330 42251356 PCT
Gso9g1236 9 35469382 35471925 Gso20g1226 20 42249330 42251356 PCT
Gso20g1226 20 42249330 42251356 Gso16g1611 16 36745044 36748319 PCT
Gso20g1226 20 42249330 42251356 Gso9g1236 9 35469382 35471925 PCT