Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1225 ATGTTTTTCCTTTCCATATATATATATACTATTAGCAAGTATATTATTGAACAAGATCTGATTTTGGGCCAAGAATCACTTGAAGGGAGTGATCCTGGTCAGAAAATGGCTCAAGAGAATCAACATATAATATTGGTTACATCGGACAATGATGAGAGGAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGACAAACATGTCTATTCTATGTGCATCTCTCCGCTCTTCACTCCCTTTTGAACTCATCAAGGGAAAGCGTTCGGCATCAGATCACATAGGCGAGGCTGTAAATTATATCCAAATTTTGAAGCAAAAGATTAATGCTCTCCAAGTCAAGAGAGATAGGCTCAAACTAATGGTTAATTCAAGTTTATTGGAAACTAGTATCGATCAACCAGAACATTCAGGTGCAGTAGTGAAGTGTGTCAACATCAATCTCATTCCAGGGGGAGTGGAAATTGCCATATGTAGTAGTGGCTTAGAGGAGGGTAGTAATTCACCTTTATCAGAGTTCATGGAAATATTGCTTCAAGAAGGATGTGATGTTGTTAGCTGTGTTTCCACTCTTGCTAATGGAAGGATATTTCATGCCATTAAGTGCGAGGTGGAGGCGGACTTGACACGCCTTGATCTTGCTAAGCTACAACACAAACTGGATCATGCAATCTTGTTGCCAAGGTAA 687 0.3945 MFFLSIYIYTISKYIIEQDLILGQESLEGSDPGQKMAQENQHIILVTSDNDERKIIRREVEKQRRTNMSILCASLRSSLPFELIKGKRSASDHIGEAVNYIQILKQKINALQVKRDRLKLMVNSSLLETSIDQPEHSGAVVKCVNINLIPGGVEIAICSSGLEEGSNSPLSEFMEILLQEGCDVVSCVSTLANGRIFHAIKCEVEADLTRLDLAKLQHKLDHAILLPR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1225 228 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 227 - -
Gso20g1225 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 104 IPR011598 GO:0046983
Gso20g1225 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 122 IPR036638 GO:0046983
Gso20g1225 228 CDD bHLH_AtORG2_like 53 119 - -
Gso20g1225 228 Pfam Helix-loop-helix DNA-binding domain 56 104 IPR011598 GO:0046983
Gso20g1225 228 Gene3D - 45 136 IPR036638 GO:0046983
Gso20g1225 228 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 18 227 IPR015660 GO:0003700|GO:0006357
Gso20g1225 228 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1225 Gso-Chr20 42231718 42233390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1225 47 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 36.723 4.66e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1225 HLH 3.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1225 - - gmx:100776724 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1225 20 42231718 42233390 Gso20g1225 20 42231718 42233390 ECH
Gso20g1225 20 42231718 42233390 Gso10g2153 10 48570714 48572233 GST
Gso16g1612 16 36749402 36757479 Gso20g1225 20 42231718 42233390 PCT
Gso9g1237 9 35501081 35502787 Gso20g1225 20 42231718 42233390 PCT
Gso20g1225 20 42231718 42233390 Gso16g1612 16 36749402 36757479 PCT
Gso20g1225 20 42231718 42233390 Gso9g1237 9 35501081 35502787 PCT