Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1224 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTAATCCAGTTTTCTAATGGTCACCACCCGCAGCACAAAATCTCCCAAGATCTGATTCTGGATGATCAAGATATCGATCAATCTCCCCTTGTCGGTTATTCCGATAAAAAATTGCGTACTAGCCGTCCAAAAAAACTATTTTATCATGAGGCTGATACCTGCCACGCTAATTCTAACCAAGAATATACAAAAAAGATGGTTCATAGAGAGATTGAAAAGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTAAGAAGAAACCCTCCATAATTAATTCCAGCCCTGAAGACCATGAGAATTACAAGCATGCATCTAGCGGTTTCACTGTCCACCAGAATAGTGGTGGAGCTGTGGGGATTGAAATCAGTGGATTCAGTGAGGAAGAGGTTCCACTTTCGAAATTGCTTGAACTGGTGTTTGAAGAGGGACTTGAAGTTGTTAATTGTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCGATGTCATTCCATCACTTCGTTGTTCTGCGTAA 744 0.4153 MFPLQRGNELVIQFSNGHHPQHKISQDLILDDQDIDQSPLVGYSDKKLRTSRPKKLFYHEADTCHANSNQEYTKKMVHREIEKQRRQEMATLHASLRSLLPLDFIKGKRSISDQMNEAVNYINHLQKNIKELSDKRDKLKKKPSIINSSPEDHENYKHASSGFTVHQNSGGAVGIEISGFSEEEVPLSKLLELVFEEGLEVVNCLSTKVNGRLLHSLQCEVDNSGSVDLSELRRKFSDVIPSLRCSA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1224 247 MobiDBLite consensus disorder prediction 134 156 - -
Gso20g1224 247 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
Gso20g1224 247 Coils Coil 115 142 - -
Gso20g1224 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 245 IPR015660 GO:0003700|GO:0006357
Gso20g1224 247 CDD bHLH_AtORG2_like 74 144 - -
Gso20g1224 247 SMART finulus 79 131 IPR011598 GO:0046983
Gso20g1224 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 144 IPR036638 GO:0046983
Gso20g1224 247 Gene3D - 64 153 IPR036638 GO:0046983
Gso20g1224 247 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 245 - -
Gso20g1224 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1224 Gso-Chr20 42216477 42217826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1224 63 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.902 6.83e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso20g1224 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1224 - - gmx:100775836 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1224 20 42216477 42217826 Gso10g2154 10 48587124 48590752 GST
Gso16g1613 16 36772365 36774137 Gso20g1224 20 42216477 42217826 PCT
Gso9g1238 9 35531021 35533003 Gso20g1224 20 42216477 42217826 PCT
Gso20g1224 20 42216477 42217826 Gso16g1613 16 36772365 36774137 PCT
Gso20g1224 20 42216477 42217826 Gso9g1238 9 35531021 35533003 PCT