Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1223 ATGCCATCTCGACAACTGCCCACGTCTGCACCACCTCCCAACCACCGCGTCTCAACCCCTCTCTTCGCTTTCACCGCCTCCGTCTGCTCTTTATTCTTTCTACTCCTCCTCTGCCTCCGGAAGCGTAAACGAACAACTCCATCCTCCAACCCCCCTCACCCGTTCTCCTACCCCGTCCTCCGCCGCGCCACGAACTCGTTCTCGACGCGCCTCGGCCACGGCGGCTTCGGCCCCGTCTTCTCCGGCACCCTCGCCGGCGACCCCGTCGCCGTCAAGCTCATGGACTCCGCCTCCCTCCAGGGCGAGCGCGAGTTCCACAACGAGCTCTTGTTCGCGTCCAGACTCCGCTCCCCTTTAGTGGTCCCCGCCATCGGATTCTCCTCCGACCCAAAACGACGCCGTTTCCTCCTCGTCTATCACCTCATGCACAACGGCAACCTCCACGACGCCCTCTTGCGCCGCAAAACCCCCCACCTCACGCTCTGGAAAAACCGCTTCTCCATAATCCTCGACGTCGCAAAAGGAATCCACTACCTCCACTCCCTCGAACCCCCCATAATCCACGGCGACATAAAACCTAGTAACATTCTTCTCGACAATTCCTTCTCAGCAAAACTAGCAGACTTTGGCCTCGCGCGCTTAAAATCGGAGATAGAAGAATTCAAACTAAAACGCGAGGAAAAGAAAAAGGAAGAGTCGGAGAGCGATGCTGGTTCCGAATTAGAAACTCAGAGCGTCAACACCGAACAGTCATTTGATGATACTGGCAGAGAGAACGCTGCCTCGGATTATGTGATGGATTGGATTGGGAAGGAGGTGAGAAAAGAAAGGCCGAACGAGGTGAAGAAGAATGGTTCTTCTTCTGCTGCTGCTACTGCAGCATCGAGTAGTGGAACGGTGGAGAAGAAAAGTAGGAAGAAATTGGAATGGTGGGAATCCATGGACGATAGTGGGGTTTTGAAGAAGGAGAAGAGGAGACCAGCAAGGGAGTGGTGGAAGGAAGAGTATTCCGAAGAGCTTGCAAGGAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGGGTAACGATGATGATGATAATAATAATTCGGAGGTAGATGATGTAAATGTGAATGTTTACAAGAGGGAGAAGAACAGGAGTAGGAACAGTCGGGGTAGTGTAGATTCATGGTTCAGCGGTGAGCTGAGAGGAATTCGATGGAATAGTTATGATTCCGGGACAGGGAGTGGAGCAAAGAGTGGGGGTGTGAGTAGCACTCCGAGCATGAGGGGAACGGTTTTCTACGTTGCTCCAGAGTATGGCTACAATGGGGATGCGTCTGAGAAGTGTGACGTGTACAGCTTCGGGGTATTGTTGCTAGTGATTGTTTCGGGGAGGAGGCCGCTTGAGGTGACGGGTTCGCCGGTATCGGAGTTTCAGCGTGCGAATCTGGTGTCTTGGGCGAGGCAATGCGCGCGGAGAGGGAAGCTTCTGGAAGTGGTGGATGAGAGTGTGGAAGGGATGGATAAAGAGCAGGCTAGTATGTGTGTAACGGTTGCGCTAATGTGCTTGCTAAAGTCACCTGCTCGTCGTCCTTCCATGAAGGAGGTTGTGGGAATGCTCAGTGGGGAGATGGAGCCGCCGCTGTTGCCGCCTGAGTACTCGCAACAGGCCAAGTTCACGTTCAAGTCGCGGCGGAACGAATGA 1695 0.5345 MPSRQLPTSAPPPNHRVSTPLFAFTASVCSLFFLLLLCLRKRKRTTPSSNPPHPFSYPVLRRATNSFSTRLGHGGFGPVFSGTLAGDPVAVKLMDSASLQGEREFHNELLFASRLRSPLVVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRRKTPHLTLWKNRFSIILDVAKGIHYLHSLEPPIIHGDIKPSNILLDNSFSAKLADFGLARLKSEIEEFKLKREEKKKEESESDAGSELETQSVNTEQSFDDTGRENAASDYVMDWIGKEVRKERPNEVKKNGSSSAAATAASSSGTVEKKSRKKLEWWESMDDSGVLKKEKRRPAREWWKEEYSEELARKKKKKKKKKKKKRKGNDDDDNNNSEVDDVNVNVYKREKNRSRNSRGSVDSWFSGELRGIRWNSYDSGTGSGAKSGGVSSTPSMRGTVFYVAPEYGYNGDASEKCDVYSFGVLLLVIVSGRRPLEVTGSPVSEFQRANLVSWARQCARRGKLLEVVDESVEGMDKEQASMCVTVALMCLLKSPARRPSMKEVVGMLSGEMEPPLLPPEYSQQAKFTFKSRRNE* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1223 564 ProSiteProfiles Protein kinase domain profile. 65 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1223 564 Pfam Protein tyrosine and serine/threonine kinase 67 224 IPR001245 GO:0004672|GO:0006468
Gso20g1223 564 MobiDBLite consensus disorder prediction 342 390 - -
Gso20g1223 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gso20g1223 564 Gene3D Transferase(Phosphotransferase) domain 1 406 557 - -
Gso20g1223 564 Coils Coil 333 353 - -
Gso20g1223 564 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 562 - -
Gso20g1223 564 MobiDBLite consensus disorder prediction 283 299 - -
Gso20g1223 564 MobiDBLite consensus disorder prediction 275 305 - -
Gso20g1223 564 MobiDBLite consensus disorder prediction 239 257 - -
Gso20g1223 564 MobiDBLite consensus disorder prediction 372 386 - -
Gso20g1223 564 Coils Coil 211 234 - -
Gso20g1223 564 SUPERFAMILY Protein kinase-like (PK-like) 49 550 IPR011009 -
Gso20g1223 564 Gene3D Transferase(Phosphotransferase) domain 1 52 244 - -
Gso20g1223 564 MobiDBLite consensus disorder prediction 224 257 - -
Gso20g1223 564 SMART serkin_6 65 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1223 564 Pfam Protein kinase domain 420 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1223 564 PANTHER OS07G0586332 PROTEIN 1 562 IPR044576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1223 Gso-Chr20 42207315 42210493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1223 415 534 Receptor kinase-like Gene Family AT3G58690 39.200 3.37e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Gso20g1223 PK_Tyr_Ser-Thr 7.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1223 - - gmx:100814336 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1223 20 42207315 42210493 Gso10g2155 10 48593369 48595724 GST
Gso16g1614 16 36778404 36782080 Gso20g1223 20 42207315 42210493 PCT
Gso9g1239 9 35538171 35541258 Gso20g1223 20 42207315 42210493 PCT
Gso20g1223 20 42207315 42210493 Gso16g1614 16 36778404 36782080 PCT
Gso20g1223 20 42207315 42210493 Gso9g1239 9 35538171 35541258 PCT