LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1222	ATGTTTACGAGTCCAATCACTCCAATGGAAAAGATGGCTCTCATTCTAGCGAGCTATCTCGTCTTGAGTACACTCTTTTCTGCAAATGCTGAGTTTGTCAAGAAGACTTACATCATTCAAATGGATAAGTCAGCAAAGCCTGACACCTTCACCAATCACCTTAATTGGTATTCATCAAAAGTGAAATCAATTTTGTCAAATTCAGTAGAAGCTGAGATGGACCAGGAAGAGAGAATCATTTATACTTACCAAACTGCTTTTCATGGACTGGCTGCCATGTTGAGCCAAGAAGAAGCTGAGAAGCTAGAGGCAGAAGAAGGTGTTGTGGCCATATTCCCTGATACAAAGTACCAACTACACACCACAAGAAGTCCAACTTTCCTTGGACTTGAACCAACACAAAGCACCAACAACATGTGGTCATTAAAGCTAGCCAACCATGATGTCATAGTGGGAGTGCTAGACACTGGGGTTTGGCCTGAGAGTGAGAGCTTCAATGACACAGGCATGAGACCAGTACCTTCTCACTGGAAAGGCGCCTGTGAGACTGGTAGAGGCTTCAGAAAACATCACTGCAACAAGAAGATTGTGGGGGCAAGAATGTTCTACCATGGATATGAAGCAGCAACGGGTAAAATTGATGAGCAAGCAGAATACAAATCACCAAGAGACCAAGATGGTCATGGCACTCACACTGCAGCTACAGTTGCTGGCTCTCCAGTGCATGGTGCTAATTTTCTAGGCTATGCTTATGGCACAGCAAGAGGAATGGCACCAGGAGCAAGAATTGCAGCATACAAAGTATGTTGGACTGGTGGATGCTTCAGCTCAGATATTCTGTCAGCTGTTGATAGAGCTGTGGCTGATGGAGTTGATGTTCTATCCATCTCTTTGGGTGGTGGAGTCTCCTCTTACTACCGTGATAGTTTATCTGTAGCTGCATTTGGAGCAATGGAGAAAGGTGTTTTTGTTTCATGTTCTGCTGGAAATGCAGGACCTGACCCTGTGAGCCTCACAAATGTGTCACCTTGGATCACCACAGTTGGAGCCAGCACAATGGATAGAGATTTTCCTGCAGATGTTAGGCTTGGAAATGGAAGAAAGATAACCGGAACCTCACTCTACAAAGGAAGAAGCATGCTCTCAGTTAAGAAACAATACCCTTTAGTATACATGGGAAATACTAATTCAAGCATCCCTGATCCAAAATCTTTGTGCTTGGAAGGTACTTTGGATCGTAGAATGGTTTCAGGCAAGATTGTTATTTGTGACAGAGGCATTAGTCCAAGAGTGCAGAAGGGTCAAGTGGTGAAAAATGCAGGAGGGGCGGGAATGATTCTCACAAACACTGCAGCCAATGGAGAGGAGCTGGTTGCTGATTGTCACCTCCTTCCAGCAGTTGCAATTGGAGAAAAGGAAGGAAAAGAGCTCAAACGTTATGTGTTAACAAGTAAAAAAGCCACTGCAACTCTAGGTTTTCAGGCTACAAGGTTGGGGGTTAGACCATCTCCTGTAGTGGCAGCATTTTCATCAAGAGGGCCAAATTTTCTCACCCTTGAAATTCTGAAGCCTGATGTGGTGGCTCCTGGGGTGAACATTCTTGCTGCTTGGAGTGAGGCCATTGGTCCATCAAGTTTGCCAACAGATCACAGAAGGGTGAAGTTCAACATACTCTCAGGAACTTCAATGTCATGCCCTCATGTGAGTGGCATTGCTGCTTTGCTCAAGGCTAGGCATCCAGATTGGAGTCCCGCTGCCATAAAATCTGCTTTGATGACCACAGCTTATGTTCATGACAATACCATCAAGCCTCTCAGAGATGCCTCAAATGCTGAAGCCTCAACTCCTTATGATCATGGTGCCGGACACATCAACCCTAGAAGAGCTCTTGACCCAGGTTTGGTCTATGATATTCAGCCACAGGACTACTTTGAATTCCTGTGCACACAGAAGCTTACTACATCTGAGCTTGGAGTTTTTGCCAAGTATTCAAACAGAACTTGCAAGCACTCTCTTTCAAGTCCAGGGGACTTGAACTATCCAGCCATATCTGTAGTTTTTCCACTGAAAAATTCCACTTCAGTTTTGACTGTTCACAGAACTGCCACCAATGTTGGTCTTCCAGTTTCCAAGTACCATGTTGTGGTTTCACCTTTTAAAGGTGCTTCTGTTAAAGTTGAGCCAGACACCTTGAGTTTTACAAGAAAATACCAGAAACTATCTTACAAAATTACCTTAACAACACAATCTCGCCAAACAGAACCTGAATTTGGAGGTCTGGTGTGGAAGGATGGTGTGCACAAGGTAAGAAGTCCAATTGTTATAACGTATCTGCCACCAATATGA	2346	0.4429	MFTSPITPMEKMALILASYLVLSTLFSANAEFVKKTYIIQMDKSAKPDTFTNHLNWYSSKVKSILSNSVEAEMDQEERIIYTYQTAFHGLAAMLSQEEAEKLEAEEGVVAIFPDTKYQLHTTRSPTFLGLEPTQSTNNMWSLKLANHDVIVGVLDTGVWPESESFNDTGMRPVPSHWKGACETGRGFRKHHCNKKIVGARMFYHGYEAATGKIDEQAEYKSPRDQDGHGTHTAATVAGSPVHGANFLGYAYGTARGMAPGARIAAYKVCWTGGCFSSDILSAVDRAVADGVDVLSISLGGGVSSYYRDSLSVAAFGAMEKGVFVSCSAGNAGPDPVSLTNVSPWITTVGASTMDRDFPADVRLGNGRKITGTSLYKGRSMLSVKKQYPLVYMGNTNSSIPDPKSLCLEGTLDRRMVSGKIVICDRGISPRVQKGQVVKNAGGAGMILTNTAANGEELVADCHLLPAVAIGEKEGKELKRYVLTSKKATATLGFQATRLGVRPSPVVAAFSSRGPNFLTLEILKPDVVAPGVNILAAWSEAIGPSSLPTDHRRVKFNILSGTSMSCPHVSGIAALLKARHPDWSPAAIKSALMTTAYVHDNTIKPLRDASNAEASTPYDHGAGHINPRRALDPGLVYDIQPQDYFEFLCTQKLTTSELGVFAKYSNRTCKHSLSSPGDLNYPAISVVFPLKNSTSVLTVHRTATNVGLPVSKYHVVVSPFKGASVKVEPDTLSFTRKYQKLSYKITLTTQSRQTEPEFGGLVWKDGVHKVRSPIVITYLPPI*	782

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1222	781	Pfam	PA domain	386	477	IPR003137	-
	Gso20g1222	781	Gene3D	-	354	499	-	-
	Gso20g1222	781	PRINTS	Subtilisin serine protease family (S8) signature	146	165	IPR015500	-
	Gso20g1222	781	PRINTS	Subtilisin serine protease family (S8) signature	224	237	IPR015500	-
	Gso20g1222	781	PRINTS	Subtilisin serine protease family (S8) signature	559	575	IPR015500	-
	Gso20g1222	781	CDD	Peptidases_S8_3	117	596	IPR034197	-
	Gso20g1222	781	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	23	120	IPR037045	-
	Gso20g1222	781	PANTHER	XYLEM SERINE PROTEINASE 1	26	775	-	-
	Gso20g1222	781	Gene3D	-	647	778	-	-
	Gso20g1222	781	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	26	775	IPR045051	-
	Gso20g1222	781	SUPERFAMILY	Protease propeptides/inhibitors	35	118	-	-
	Gso20g1222	781	ProSiteProfiles	Serine proteases, subtilase domain profile.	116	630	-	-
	Gso20g1222	781	Gene3D	Peptidase S8/S53 domain	148	643	IPR036852	GO:0004252\|GO:0006508
	Gso20g1222	781	Pfam	Peptidase inhibitor I9	36	120	IPR010259	-
	Gso20g1222	781	ProSitePatterns	Serine proteases, subtilase family, serine active site.	560	570	IPR023828	-
	Gso20g1222	781	CDD	PA_subtilisin_like	360	491	-	-
	Gso20g1222	781	Pfam	Subtilase family	148	600	IPR000209	GO:0006508\|GO:0008236
	Gso20g1222	781	SUPERFAMILY	Subtilisin-like	119	634	IPR036852	GO:0004252\|GO:0006508
	Gso20g1222	781	Pfam	Fibronectin type-III domain	677	775	IPR041469	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1222	Gso-Chr20	42195070	42197893	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1222	8	781	Subtilisin-like Serine Gene Family	AT5G51750	70.528	0.0	1140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1222	-		-	gmx:102661592	1555.04

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso20g1222	20	42195070	42197893	Gso10g2156	10	48602400	48605289	GST
	Gso16g1616	16	36797286	36799972	Gso20g1222	20	42195070	42197893	PCT
	Gso9g1241	9	35556729	35559417	Gso20g1222	20	42195070	42197893	PCT
	Gso20g1222	20	42195070	42197893	Gso16g1616	16	36797286	36799972	PCT
	Gso20g1222	20	42195070	42197893	Gso9g1241	9	35556729	35559417	PCT