Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1219 ATGCCTTCGCTCTCTCTCTCTGACCCTGACACCCCCAAACCTATTGCCAAGAAGAAAACCAAAACCCAGTCCCTCACCGATCCCGACCTCGATGGGGTTTCGGGGAAGAAGACGAAGAAGCGCAAGGCTTCAGATTTAGAACAAGAGGCCATGCCCCCCGCCGCTTACAACAACGATGGGGACGACGAGACCAGCTCCGACCTCGTCCAACCCGAACCTGCTTCCAGAGAAGACGACAACAAGAATAAGAAGAAAAAGAAGAAAAAGGTTGTTAAGTCCGAAGAAAAGGAACAGCCTTTGGTCACGGAGGCTAATGGAGAAAAGAAGGAGGATCCCAACGCGCTTTCCAACTTCAGGATTTCGGAACCCTTGAGGCAAAAATTGAAGGAGAAGGGTATCGAATCACTGTTTCCCATTCAGGCCATGACCTTCGACACCGTTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAATAAATGGTCCAACAAAAGCTTCAAGAAAGACTGGCTTCGGGAGGACTCCAAGTGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGATGTTTATGGTGGGGCAATGGGATTGAGTTCATGTTGTTTATATGGCGGAGCTCCGTATCAAGGTCAGGAAATTAAGCTTAGGAGAGGTGTTGATATTGTCATTGGCACACCAGGTCGTGTGAAGGATCATATCGAGAAAGGGAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGACGAAGCCGATGAAATGCTGAGGATGGGTTTTGTTGAAGATGTTGAAATGATTCTAGGCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAATTGCTGCAAGATTTTTGAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCCAGCATCAATGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGGCCCAACTTATCCCAGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTGTTTTTACCGAGACAAAAGAATCTGCTTCTCAGCTTGCAGGGATCTTGACTGGAGCAAAAGCTCTCCATGGTGACATACAGCAATCAACACGTGAGGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATACAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTATGCTTTATGACCCAAAAAGATCGAACATATCTAGAATAGAGAGAGAGTCTGGTGTAAAATTTGAACACGTATCTGCTCCTCAGCCTGATGATATTGCCAAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATCTTTTGCCTATGGAGTCTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCCGTGAAAGGTCTTTCAATCACTGCTGATGGAAATGGCGTTGTTTTTGATGTAGCAGCTAAAGATTTAGACATATATCTTAACGGTCAGGAAAATGCCTCGAATGTAAGTTTAGAGATAGTGAAAACATTGCCACAGTTGCAACAGATGGAGCAACACCAAAGAGGTGGCAGATTTGGTGATGGTGGTGGTCGTGGTTACCGGTTTGGTGGAAGAGGTGGAGGAGGCAGGAATGGTAGGTTCTCCAATGGTGGCGGAAGAGGTGGACGTGGCGGCAACTGGGGTGGAAAGAGATGGTGA 2082 0.4534 MPSLSLSDPDTPKPIAKKKTKTQSLTDPDLDGVSGKKTKKRKASDLEQEAMPPAAYNNDGDDETSSDLVQPEPASREDDNKNKKKKKKKVVKSEEKEQPLVTEANGEKKEDPNALSNFRISEPLRQKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKASRKTGFGRTPSVLVLLPTRELACQVHADFDVYGGAMGLSSCCLYGGAPYQGQEIKLRRGVDIVIGTPGRVKDHIEKGNIDLSQLKFRVLDEADEMLRMGFVEDVEMILGKVENVNKVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKMKASINVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILTGAKALHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQVSDSVVPAFKSAAEDLLNNSGLPVIELLAKALAKAVGYTEVKQRSLLTSMENYVTLLLETGKPIYTQSFAYGVLRRFLPEEKVEAVKGLSITADGNGVVFDVAAKDLDIYLNGQENASNVSLEIVKTLPQLQQMEQHQRGGRFGDGGGRGYRFGGRGGGGRNGRFSNGGGRGGRGGNWGGKRW* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1219 693 CDD GUCT_RH7_like 554 639 - -
Gso20g1219 693 CDD SF2_C_DEAD 341 467 - -
Gso20g1219 693 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Gso20g1219 693 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 27 675 - -
Gso20g1219 693 Pfam Helicase conserved C-terminal domain 359 458 IPR001650 -
Gso20g1219 693 Gene3D - 61 326 IPR027417 -
Gso20g1219 693 SMART helicmild6 381 458 IPR001650 -
Gso20g1219 693 Gene3D - 336 564 IPR027417 -
Gso20g1219 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 326 IPR014001 -
Gso20g1219 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 497 IPR001650 -
Gso20g1219 693 SUPERFAMILY RNA-binding domain, RBD 551 634 IPR035979 GO:0003676
Gso20g1219 693 MobiDBLite consensus disorder prediction 32 47 - -
Gso20g1219 693 CDD DEADc 124 321 - -
Gso20g1219 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 471 IPR027417 -
Gso20g1219 693 MobiDBLite consensus disorder prediction 648 693 - -
Gso20g1219 693 MobiDBLite consensus disorder prediction 91 115 - -
Gso20g1219 693 SMART ultradead3 132 344 IPR014001 -
Gso20g1219 693 MobiDBLite consensus disorder prediction 1 118 - -
Gso20g1219 693 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 675 - -
Gso20g1219 693 Gene3D - 565 636 - -
Gso20g1219 693 Pfam GUCT (NUC152) domain 547 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gso20g1219 693 Pfam DEAD/DEAH box helicase 137 314 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1219 Gso-Chr20 42171559 42176443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1219 87 464 Eukaryotic Initiation Factors Gene Family AT1G72730 28.796 9.03e-39 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1219 20 42171559 42176443 Gso20g1219 20 42171559 42176443 ECH
Gso20g1219 20 42171559 42176443 Gso10g2159 10 48623246 48627984 GST