Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1215 ATGGAAGACAATGCCTTCCTGCTCTTGTTCTATGCTGGCCGTCGCAACTGGAAGCTTCTCATGTCTCCTTTACTGCTCGTGCTTTTGCTTCTCTCTCCACTTGCTTCCCCCTTCAGTGAAGAAGGACAAGCACTAATGGCGATGAAGGCTTCGTTCGGCAATATGGCAGACACTCTCCTTGACTGGGATGACGCGCATAATGACGACTTTTGTTCTTGGCGTGGAGTTTTCTGTGACAATGTCAGCCTTACTGTGGTTTCTCTGAACCTCTCCAGCTTGAACCTTGGTGGAGAGATATCACCAGCCATTGGTGATTTGGGAAACCTGCAATCCATAGACTTGCAAGGGAGTAAACTAACCGGGCAAATCCCAGATGAAATTGGAAACTGTGCAGGACTCGTTCATCTGGATTTGTCCGATAATCAGCTTTACGGTGATATACCTTTCTCCTTGTCAAAGCTGAAGCAACTCGAGTTCTTAAATTTAAAGAGCAATCAATTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCAAACCTGAAGACTCTTGATCTTGCTCGAAATAGGCTCACTGGAGAGATACCAAGAATACTCTATTGGAATGAAGTCTTGCAGTACCTTGGGTTGCGTGGGAACATGTTGAGTGGTACTTTGTCCCCTGATATCTGCCAATTAACTAGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGGACATATCATATAATCGGATTACTGGGGAGATTCCATATAATATTGGATTTCTGCAAGTTGCTACTTTGTCACTTCAAGGAAATAGATTAACTGGGGAGATTCCAGAAGTGATTGGTTTAATGCAAGCCCTTGCAATATTGGATTTGAGTGAGAATGAGTTAGTGGGACCAATTCCCCCAATTCTTGGCAATCTGACTTTCACTGGCAAGCTGTACCTTCACGGAAACATGCTTACAGGTCCAATACCTCCCGAACTCGGCAATATGTCCAAACTGAGCTACCTGCAATTGAATGACAACCACCTAGAGGGTAATATTCCAAATGAATTTGGGAAGCTAGAACATCTTTTTGAATTGAATCTTGCCAATAATCATCTTGATGGAACTATCCCACATAACATAAGTTCTTGCACTGCCTTAAATCAGTTTAATGTGCATGGTAATCAGTTAAGTGGTTCCATTCCATTGAGCTTCCGCAGCCTAGAGAGTTTGACATACTTAAACCTCTCTGCAAACAACTTCAAGGGGATTATACCAGTTGAGTTGGGGCATATCATTAATCTAGACACATTGGATCTATCTAGCAATAATTTTTCAGGGATTGTGCCAGCATCTGTTGGTTTTCTTGAGCATCTCCTGACCCTGAATTTGAGTCATAACCACCTTGATGGTCCCTTGCCTGCTGAATTTGGGAATCTCAGAAGCATTCAGATTCTTGATTTGTCATTCAATAATCTCTCTGGTATCATTCCTCCGGAAATTGGACAGCTGCAGAACCTTATGTCTCTGATTATGAACAACAATGATCTGCATGGGAAGATTCCTGATCAGTTGACTAATTGTTTCAGTCTTACCTCACTAAATTTGTCCTATAATAACCTTTCCGGAGTAATTCCTTCAATGAAGAACTTCTCACGGTTTTCAGCTGACAGCTTCCTTGGAAATTCTTTGCTATGTGGAGATTGGTTAGGATCAATATGTTGCCCTTATGTACCAAAATCAAGAGAGATTTTTTCGAGAGTTGCTGTTGTATGCCTCACGCTTGGAATTATGATATTGTTGGCCATGGTAATTGTAGCGTTCTACAGATCCAGCCAATCGAAGCGATTGAGGAAAGGATCCAGCAGAACTGGGCAAGGTCCTCCAAAACTGGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGATGTACTGAGAATCTCAATGAGAAATATATCATAGGGTATGGTGCGTCTAGCACTGTATACAAATGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTGTACAACCAACAAGCACACAATTTAAGGGAGTTTGAGACTGAACTTGAAACAGTTGGGAGCATTAGACATAGAAACCTTGTCACCTTGCATGGATATGCTCTTACTCCCTATGGAAATCTCCTTTTCTATGACTATATGGCGAATGGCTCACTGTGGGATCTTCTACATGGTCCCTTGAAGGTAAAACTTGATTGGGAAACTCGCCTGAGGATTGCTGTTGGAGCAGCAGAAGGACTTGCATATCTCCATCATGACTGCAACCCACGTATAGTTCACAGGGACATAAAGTCTTCAAACATTCTGCTGGATGAGACTTTTGAGGCTCATCTTTCTGATTTTGGCACTGCAAAATGTATCTCAACCACAAGAACTCATGCATCGACTTATGTCCTTGGAACTATAGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCAGATGTATATAGCTTTGGCATAGTTCTGCTGGAGCTACTTACTGGGAAGAAGGCAGTGGACAATGAGTCCAATTTGCATCAATTGATATTGTCCAAGGCAGATAGCAACACTGTAATGGAAGCTGTGGATCCAGAGGTCTCCATAACCTGCATTGATCTGGCTCACGTTAAGAAGACTTTCCAGCTTGCTTTGCTTTGCACGAAAAAGAACCCTTCTGAGAGGCCTACTATGCATGAAGTAGCCAGGGTGTTGGTATCACTACTTCCTTCACCACTAAGTAAAATCCTTGCCCCTCCTGCAAAGAAGTTCGACTATGCCCATTTCGTGATCGAGAAGGGACAACAACGAAAAGTGGAAGAACAAAAACCTCAGCAGGATAACATCTTACCCAATGCTCAATGGTTTGTTCGTTTTGGGGATGTTATATCCAAAAGCACTTGA 2970 0.4236 MEDNAFLLLFYAGRRNWKLLMSPLLLVLLLLSPLASPFSEEGQALMAMKASFGNMADTLLDWDDAHNDDFCSWRGVFCDNVSLTVVSLNLSSLNLGGEISPAIGDLGNLQSIDLQGSKLTGQIPDEIGNCAGLVHLDLSDNQLYGDIPFSLSKLKQLEFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRILYWNEVLQYLGLRGNMLSGTLSPDICQLTSLWYFDVRGNNLTGTVPDSIGNCTSFEILDISYNRITGEIPYNIGFLQVATLSLQGNRLTGEIPEVIGLMQALAILDLSENELVGPIPPILGNLTFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNHLEGNIPNEFGKLEHLFELNLANNHLDGTIPHNISSCTALNQFNVHGNQLSGSIPLSFRSLESLTYLNLSANNFKGIIPVELGHIINLDTLDLSSNNFSGIVPASVGFLEHLLTLNLSHNHLDGPLPAEFGNLRSIQILDLSFNNLSGIIPPEIGQLQNLMSLIMNNNDLHGKIPDQLTNCFSLTSLNLSYNNLSGVIPSMKNFSRFSADSFLGNSLLCGDWLGSICCPYVPKSREIFSRVAVVCLTLGIMILLAMVIVAFYRSSQSKRLRKGSSRTGQGPPKLVILHMDMAIHTLDDIMRCTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQQAHNLREFETELETVGSIRHRNLVTLHGYALTPYGNLLFYDYMANGSLWDLLHGPLKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDETFEAHLSDFGTAKCISTTRTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADSNTVMEAVDPEVSITCIDLAHVKKTFQLALLCTKKNPSERPTMHEVARVLVSLLPSPLSKILAPPAKKFDYAHFVIEKGQQRKVEEQKPQQDNILPNAQWFVRFGDVISKST* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1215 989 Gene3D Ribonuclease Inhibitor 203 314 IPR032675 -
Gso20g1215 989 Pfam Leucine rich repeat 443 502 IPR001611 GO:0005515
Gso20g1215 989 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Gso20g1215 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Gso20g1215 989 SUPERFAMILY Protein kinase-like (PK-like) 640 927 IPR011009 -
Gso20g1215 989 ProSiteProfiles Protein kinase domain profile. 662 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1215 989 Pfam Protein kinase domain 664 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1215 989 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Gso20g1215 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 29 966 - -
Gso20g1215 989 SUPERFAMILY L domain-like 41 334 - -
Gso20g1215 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 29 966 - -
Gso20g1215 989 Pfam Leucine Rich repeat 179 194 IPR001611 GO:0005515
Gso20g1215 989 Pfam Leucine Rich repeat 249 266 IPR001611 GO:0005515
Gso20g1215 989 Pfam Leucine Rich repeat 537 552 IPR001611 GO:0005515
Gso20g1215 989 SMART serkin_6 662 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1215 989 SUPERFAMILY L domain-like 320 576 - -
Gso20g1215 989 SMART LRR_typ_2 226 250 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 441 464 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 465 488 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 297 325 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 417 440 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 106 130 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 345 368 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 369 393 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 154 177 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 178 202 IPR003591 -
Gso20g1215 989 SMART LRR_typ_2 489 513 IPR003591 -
Gso20g1215 989 Gene3D Ribonuclease Inhibitor 315 586 IPR032675 -
Gso20g1215 989 Gene3D Ribonuclease Inhibitor 38 202 IPR032675 -
Gso20g1215 989 Gene3D Transferase(Phosphotransferase) domain 1 738 935 - -
Gso20g1215 989 Gene3D Phosphorylase Kinase; domain 1 627 737 - -
Gso20g1215 989 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1215 Gso-Chr20 42117402 42125380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1215 108 989 Receptor kinase-like Gene Family AT5G07180 76.557 0.0 1357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gso20g1215 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1215 K20718 - gmx:100811653 1880.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1215 20 42117402 42125380 Gso10g2163 10 48666466 48674043 GST