Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1207 ATGGAGGAAGAAGAGAGTCAGTGCTTCGAGTGCCTCCAACTTCGAATAAAGTCCGATTTCTCGGAGCAAGTGTTTTTCAATTATGCCATTTCCACTTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTTAATATTTCTGGTACAGCTGATGGCGAAACTTCGGGTGCTCAATTTATATTGCAGTACATGCCGACTCGTGATAAGAATTGTTTTATCAATTATGTAAATGAATATATTTTGGATAGTGGTGAAATCACTACTAGGAGTAGTGATCCTGGTATTGGAAGCAGTGAAGATAATAATGCTGTTAATGTTAGAATTACTTCATCAGATGATTCTGAGAGTGGAAAAGCTTTTTCTGGAAGCACGAGTTGTAGTCATTCTGGAAGATTTTCTTGCTTGAGGACAATCACTTCACTTGCGCCAATTGCTCGTGTGGGAATGTCTTCCTATTCCACATTTCAAGAGGTCTCCACTGATTTCTTGTCTGAGTTAATCGAAGATCACGTGTTAGAGTCACTTGATCTCTTCATTGAAGGGAAAGCGTCTGGACGGGACAGTGTAAATTTCCTTAGTTTAATTGGGTTGCCATCATTTGAAGAGGATCCTTTTCCAGGCTCTTTGAGGCATCCAAACATAGCTCCTGTCCTTGCAATTTTTAAAACATCCGATCACGTTAATGTTGTGCTTCCAAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAACCCCAACGCATTAAAGTCTAATTGGAATATAATATTTCTTATGTATCAGCTACTCTCAGCCTTATCGTACATACATGGTTTAGGGCTTTCTCATGGTAATATATGCCCGTCCAATATCATGTTGACTGACTCATTATGGTCTTGGCTGAGATTATGGAATGAACCCGTATTGGAATCTAATTTAACTTTGCAAGAGAGTGAAAGAGATAACTCCAAACCTGCAAGAATTGGTTGTTGTAATGTGGCTTGTCGTTCTTATGACCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCAATCTTGTTTTCATAAATGGTGGAGAGGAGAATTAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGACAGTTGTGACGCAGGGTGGCGAGACTTGAGCAAGAGCAAATGGCGCTTGGCAAAAGGTGATGAACAATTGGATTTCACCTATTCAACGTCTGAAATCCCTCATCATGTTTCAGATGAATGTTTGTCTGAATTGGCTGTCTGTAGTTATAAAGCAAGAAGACTCCCTTTGAGTGTTCTCCGAATGGCTGTTCGTTCAGTGTATGAGCCTAATGAATATCCTTCCACAATGCAGAGGCTCTATCAATGGACCCCTGATGAGTGCATTCCAGAGTTCTACTGTCATGCCCAAATTTTTAAGTCAATACATGATGGAATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTACATCGTGATGCATTAGAAAGTAATAGGGTGTCATTTCAACTCCATCATTGGATAGATATAACCTTTGGTTACAAAATGTCTGGCCAGGCAGCTATTGCTGCTAAGAATGTTATGCTTCCTATATCAGAACCCATGATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACACAACCACACCCCATCCGTCATGCCACTACCAGAACAAAACGTCATGGTTCCAATAAATATGCCAAAGTTTGGATTCAAGCAAATGAAATGCACCAAGAGACATCTCTTCTATCTGAAACTGCTTATCTACAAGAACTAGAGCAAGCATCTACATTTTCTGAACAGGCTAGGCATTTGAATGCCTATTACCATTATCCCTTAAATCAAACAACAGGGAAGAACATCTCATCTTCGGGAGATCCAACAACAGAGACATTTAGTGAAAGTATAAGCAAACTATCTTTGATTGACAGAAATTACCAGGTGCCGTATAGAATGAACCTAATATCTTTTCTTCAACATATGAAAGAGGAAGATGAAAGCTCCTTAGGATATCCAGACTTGCTACTTTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGAAGTTGCTAGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTGCAGGCCGCTCTTTGATCCAATCTCATTGGCAATATACTTGGAAGAAGGAACCTTACCAGGATTTCTGCAGGATCTACCTCCTGATATTAGATTACTAGTTGAAGCATGCATCCAAAAGGATTGGACAAGGAGGCCATCTGCCAAAATTCTTCTGGAATCTCCTTATTTTCCAAAGACTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGATGAAACTCGTCTTCATTATGCTGCAAATCTTGCAAAGCATGGAGCTCTGAGGGAAATGGGTGCATTTGCGACTGAAATGTGCACTACTTATTGCTTACCACTTATAGTGAATGCTGTGAGTGATACTGAAGCTGAATGGGCATATATGCTACTGAAGGAATTTATGAAATGCCTAACAGTTCAAGCAATGAAAACATTAATCTTGCCTACCATACAGAAAATTTTACAGACCACAGGTTATTTACGTTTAAAGGTTTCCCTTCTGCAAGATTCATTTGTGCGGGAAATATGGAATCGAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACAATTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTTCTTCTAATCAGTTCTAGTGAAGAACTTGGTGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAGGGACTATGTGCGGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATCATTAAACAGATGGTACCTTTACTGAAAAATGTTGTCCGTTCCTTCATTGATGTGTCATGCATGAATAAGGCAGATCCTGTCCAGAGTTGGAGTGCTTTAGCACTTATTGATTGCATGATGACTTTAGATGGCCTTGTATATTTCTTGACAGAAGAGGTCATTGTAAAGGAGCTGCTTGAAGACCTATGTTGCATACACATTGGAGTTCTTATGCAGAAACATATGGAAATTGCAGTGCTTCAGGTGGCTGCTTCTACTCTTTTTGGAATTTGTCAGCGGATTGGAGCAGATTTGACAGCATTGCATATTCTTCCAAAACTGAAAGAACTATTTGATGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCAACTACTGTTGGCAGAAACTTGAAGGTTGGCAAAATAAAAATTGGAGGAGACTTGCATATTGAAAGTCGTATGGATCTAGTGTTGGTTCTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGATTCTTGAACAACATCTTCTACGCCATCATAATTGGAAGTGGGAATATGCTGGAGAATCATCAAAAAACAGCTCAGAAAATTTTCTTGCTAGAAGACCTGTAATAGCCCAGGGATTTACATCTGAATACAATCCTGCAAAGCTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAAGGAAGAAGTGCCAAAAATTTGATCCCTCAAAGACGACCATTTAAAGTTCATCAAAGTCCAGTAGCAGTGCATGAAGGAATGTCATACCAAATGAACCATGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGGTTCAGAAAGACGAACTTCCATGGAAGATAAGAGCATCTGTTATATACTCTATACGTGCACATCATGGAGCAGTGAGGTCTCTGGCTGTTAACCAAGATGAATGTACTGTTTTTACTGCAGGAATTGGCCAAGGATATAAAGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTCTGTCTGGCTACCATGGCCATGAGGAGGTTGTGAATGATATTTACATCTTATCATCTAGTGGAAGAGTGGCTTCTTGTGATGGAACAATTCACATTTGGAATAGTCAAACAGGGAAGCAGATATTAGTATTTGCTGAGTCCCAAACAGAATCTGGCCATCCTACAAGCCATCCATCCTCTGCATCAAAAATTAACAGTGACCAGGCAAATGTGCTTAATATGAATACACTATCCAATGGAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGGTTCATTGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGTATCTAGTTTTCCTTCACTTATTTCTGCCATTTGTTCCACTGGCTCTGACAAGATGCAAGCAGGTGGAATTTCCACTTTGCCATCTTTTATTGCAGCTGGACTAAGTTCTGGTCACTGTAAATTATTTGATGCAAAGAGTGGAAATGTAATTTCCTCTTGGCGAGCTCATGATGGATATGTGACAAAGTTGGCAGCACCTGAGGAACATCTACTTGTTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTAAGAATGAATCTGCCATTGCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCGTTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGAATCGGGCTTCTCTCCTTGTCTAAATCTGCCAATGAAACAGATGGGCAGCATCACATTAGCCCCCAGAAACTATATATTTCTGATAATGGTCAGAGAAGCTTGTCAGCGTTATCAAGTATTAGTATACTTCCATTCTCTCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTGAGAATCTGTTGTTAA 4980 0.4028 MEEEESQCFECLQLRIKSDFSEQVFFNYAISTSAFPFGSSAIVNISGTADGETSGAQFILQYMPTRDKNCFINYVNEYILDSGEITTRSSDPGIGSSEDNNAVNVRITSSDDSESGKAFSGSTSCSHSGRFSCLRTITSLAPIARVGMSSYSTFQEVSTDFLSELIEDHVLESLDLFIEGKASGRDSVNFLSLIGLPSFEEDPFPGSLRHPNIAPVLAIFKTSDHVNVVLPKTPYNLESILHFNPNALKSNWNIIFLMYQLLSALSYIHGLGLSHGNICPSNIMLTDSLWSWLRLWNEPVLESNLTLQESERDNSKPARIGCCNVACRSYDLYADLKLSPTIDWQSCFHKWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDSCDAGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCHAQIFKSIHDGMADLAVPSWAESPEDFIKLHRDALESNRVSFQLHHWIDITFGYKMSGQAAIAAKNVMLPISEPMMPRSTGRRQLFTQPHPIRHATTRTKRHGSNKYAKVWIQANEMHQETSLLSETAYLQELEQASTFSEQARHLNAYYHYPLNQTTGKNISSSGDPTTETFSESISKLSLIDRNYQVPYRMNLISFLQHMKEEDESSLGYPDLLLWKQKLSSSRLCSEEVARDIFSIGCLLAELHLCRPLFDPISLAIYLEEGTLPGFLQDLPPDIRLLVEACIQKDWTRRPSAKILLESPYFPKTVKSSYLFLAPLQLVAKDETRLHYAANLAKHGALREMGAFATEMCTTYCLPLIVNAVSDTEAEWAYMLLKEFMKCLTVQAMKTLILPTIQKILQTTGYLRLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYNSPDKSSAASASVLLISSSEELGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGELFIIKQMVPLLKNVVRSFIDVSCMNKADPVQSWSALALIDCMMTLDGLVYFLTEEVIVKELLEDLCCIHIGVLMQKHMEIAVLQVAASTLFGICQRIGADLTALHILPKLKELFDELAFSQEISKGSTTVGRNLKVGKIKIGGDLHIESRMDLVLVLYPSFASLLGIEKLRQCCATWLILEQHLLRHHNWKWEYAGESSKNSSENFLARRPVIAQGFTSEYNPAKLLLNGVGWSIPQSQGRSAKNLIPQRRPFKVHQSPVAVHEGMSYQMNHEPWFWFPSPATIWDGPEFLGRVGVQKDELPWKIRASVIYSIRAHHGAVRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYHGHEEVVNDIYILSSSGRVASCDGTIHIWNSQTGKQILVFAESQTESGHPTSHPSSASKINSDQANVLNMNTLSNGILSSAFDSSLYTCMHLLNSTETLVVGTGNGSLRFIDVARGQKLHIWRGESTVSSFPSLISAICSTGSDKMQAGGISTLPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLVSSSLDRTLRVWDLRMNLPLQPIIFRGHSDGISSFSVWGQDVISISRNRIGLLSLSKSANETDGQHHISPQKLYISDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC* 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1207 1659 Gene3D BEACH domain 340 580 IPR036372 -
Gso20g1207 1659 ProSiteProfiles BEACH domain profile. 336 608 IPR000409 -
Gso20g1207 1659 SUPERFAMILY Protein kinase-like (PK-like) 720 814 IPR011009 -
Gso20g1207 1659 ProSitePatterns Trp-Asp (WD) repeats signature. 1548 1562 IPR019775 -
Gso20g1207 1659 SUPERFAMILY BEACH domain 334 580 IPR036372 -
Gso20g1207 1659 Gene3D - 1492 1659 IPR015943 GO:0005515
Gso20g1207 1659 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1530 1563 - -
Gso20g1207 1659 Gene3D - 1274 1491 IPR015943 GO:0005515
Gso20g1207 1659 Pfam Beige/BEACH domain 350 560 IPR000409 -
Gso20g1207 1659 CDD Beach 350 580 IPR000409 -
Gso20g1207 1659 SMART Beach_2 348 580 IPR000409 -
Gso20g1207 1659 CDD PKc 207 288 - -
Gso20g1207 1659 Pfam Protein kinase domain 207 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1207 1659 Gene3D Transferase(Phosphotransferase) domain 1 205 324 - -
Gso20g1207 1659 PANTHER GH12955P 3 1659 - -
Gso20g1207 1659 ProSiteProfiles Trp-Asp (WD) repeats profile. 1530 1563 IPR001680 GO:0005515
Gso20g1207 1659 SUPERFAMILY Protein kinase-like (PK-like) 207 290 IPR011009 -
Gso20g1207 1659 SMART WD40_4 1523 1561 IPR001680 GO:0005515
Gso20g1207 1659 SMART WD40_4 1296 1339 IPR001680 GO:0005515
Gso20g1207 1659 SMART WD40_4 1342 1379 IPR001680 GO:0005515
Gso20g1207 1659 SMART WD40_4 1424 1461 IPR001680 GO:0005515
Gso20g1207 1659 SMART WD40_4 1624 1659 IPR001680 GO:0005515
Gso20g1207 1659 Pfam WD domain, G-beta repeat 1344 1379 IPR001680 GO:0005515
Gso20g1207 1659 Pfam WD domain, G-beta repeat 1525 1561 IPR001680 GO:0005515
Gso20g1207 1659 SUPERFAMILY WD40 repeat-like 1299 1657 IPR036322 GO:0005515
Gso20g1207 1659 Gene3D Transferase(Phosphotransferase) domain 1 708 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1207 Gso-Chr20 42013401 42023030 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Gso20g1207 Beach 1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1207 K17601 - gmx:100810047 3328.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1207 20 42013401 42023030 Gso10g2172 10 48778724 48788587 GST