Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1203 ATGGATCCTCATGGTCAAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTTGTGGTGGCTATGATCCGCAGCCAATACTGGTTGTTCCTCAACCAATTGAGGGGCTTCATGAAACTGGCCCTCCACCATTCCTCACAAAAACATACGACATCGTTGATGACCCTTCCACAAACCATATAGTTTCCTGGAGCACGGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTCCCCAAATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAGAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGTTGTTTCTTAGAGGGCAAAAGATTCTTCTGAAGAACATTAGAAGGAGGAAAGCAAATCATCAATCTCACGCAATGCAGCAGCAAGGTGTAGTAGAGCCTTGTGTTGAGGTGGGGCCGTTTGGATTAGATGGAGAAGTTGATCGGTTGAGGCGAGACAGGCAAGTTCTTATGGTGGAGTTGGTGAAGCTCAGACAACAGCAGCAAAGTACCAAATCTCACCTTCAAGAAATGGAAGGAAGGCTTAAAAAGACTGAACAGAAACAGCAACAAATGATGAATTTTTTGGCCAGGGCAATGCAGAATCCAAACTTCGTCCAACAATTAGCTCAGCAAAAGGAGTACTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGGCCTATTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGTGGTGATGATGAGTTATTAGGTTGTGCTGAAGAGTGTTCAAATTTCGTTAAACTTGAACCGCAGGAATACACTGCCAAGGTATTAGAGTTTGAGGTACCTGATCTACCCCTTGTTTTGAATCTTGATGAGGAGAATATTGAAAGCCAAAAGAGAATATTGGAGGAAGATAATATTCGACTAGAAAGTAGAGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTGAAGATCATGGTGTACTAGGTGTTGAAGATGTAGATGTATTGGCCAATCAACTTGGTTATTTGGCCTCTAGTCCTAAATAG 1101 0.4251 MDPHGQVKEEFLGESSSFCGGYDPQPILVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSITLLPKFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANELFLRGQKILLKNIRRRKANHQSHAMQQQGVVEPCVEVGPFGLDGEVDRLRRDRQVLMVELVKLRQQQQSTKSHLQEMEGRLKKTEQKQQQMMNFLARAMQNPNFVQQLAQQKEYWRKELEEAFSKKRRRPIDQGPSNVVEVGGDDELLGCAEECSNFVKLEPQEYTAKVLEFEVPDLPLVLNLDEENIESQKRILEEDNIRLESRDKDIDEVFWQDLLNEGIEDHGVLGVEDVDVLANQLGYLASSPK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1203 366 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 8 347 - -
Gso20g1203 366 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 Coils Coil 303 323 - -
Gso20g1203 366 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 Coils Coil 164 205 - -
Gso20g1203 366 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Gso20g1203 366 Coils Coil 223 243 - -
Gso20g1203 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 347 IPR027725 -
Gso20g1203 366 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso20g1203 366 Gene3D - 37 135 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1203 Gso-Chr20 41984841 41987410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1203 23 364 HSF AT3G22830 58.333 9.82e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso20g1203 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1203 K09419 - gmx:100809515 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1203 20 41984841 41987410 Gso10g2178 10 48817618 48820075 GST
Gso1g1991 1 56435066 56438741 Gso20g1203 20 41984841 41987410 PCT
Gso11g0086 11 702196 705722 Gso20g1203 20 41984841 41987410 PCT
Gso20g1203 20 41984841 41987410 Gso1g1991 1 56435066 56438741 PCT
Gso20g1203 20 41984841 41987410 Gso11g0086 11 702196 705722 PCT