Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1200 ATGAACGGCGGTGCCACCACCGCCACCTTCCGATCCATCCTCGACAAGCCCCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAACAGGTCATTTCCCTGAAAGCGCTGCTGGAACCTTCCGACGATGATACTCCTCCTCCTACCGCCATGCACCACCGTAGTCATGCTCCTCCCCCTCCACCTCAACCTCAATCTCAAGTGAATTTGACTGAACCTCCTCCTCCGCCCAAGGCTCCGCCACCTGAAGAATCCTCTTTTCATGCTGCTGAAGACATTCAGAAACCTGCGTCGTCTGGGGAAAAACCTTCGGAAACTAATGACACCAACACCAACGTTGCTAGCCCCAAAGGGTGTGCAACTAGTGGATCATTTGGGCAAATGACAATTTTCTATTGTGGTAAGGTGAATGTCTATGATGGAGTCTCGCCTGATAAGGCACGAGCAATCATGCAGCTTGCGGTGAGTCCTGTCCAGTTTACTCAAGATGATCCTTCAAATGGAAATGCAGCTGTTTGGCCTTCTCCTTGCCACTTACCAATGGATAAGGATGTCCTCATTCCTGTAGATACAACAATCCTTCAGGTTGCTCAATCAGATAAGATGATGGAATATCCTCTGCAATATAGAGAGAAAGGTAGCATAGCTCGTGATGCTGATGTAGAGGGTCAGGCAAGCAGAAAAGTGTCATTGCAGCGATATCTTGAAAAGCGTAAGGACAGGGGGAGATTGAAAGGCAAGAAATTGACTGGGATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAAGGTCCATGCCTCAAATGGGAATTCAAGCCGTAGCAGTACTAGCTCTCCACCACAGCCTAGACTGCCTCTAGTATCTAGTGGTTCAGCTGACAACCAGCTAAAGGTTGCCCTTCCCATTGATCTCAATGACAAAGTGTCTTTGCAGATGTTCAAGAATGCTAAAACTCTAACTAGATAG 1053 0.4824 MNGGATTATFRSILDKPLNQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDTPPPTAMHHRSHAPPPPPQPQSQVNLTEPPPPPKAPPPEESSFHAAEDIQKPASSGEKPSETNDTNTNVASPKGCATSGSFGQMTIFYCGKVNVYDGVSPDKARAIMQLAVSPVQFTQDDPSNGNAAVWPSPCHLPMDKDVLIPVDTTILQVAQSDKMMEYPLQYREKGSIARDADVEGQASRKVSLQRYLEKRKDRGRLKGKKLTGITSSNFEMYLNLPVKVHASNGNSSRSSTSSPPQPRLPLVSSGSADNQLKVALPIDLNDKVSLQMFKNAKTLTR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1200 350 MobiDBLite consensus disorder prediction 65 142 - -
Gso20g1200 350 MobiDBLite consensus disorder prediction 78 109 - -
Gso20g1200 350 Pfam tify domain 153 180 IPR010399 -
Gso20g1200 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 7 326 IPR040390 -
Gso20g1200 350 ProSiteProfiles Tify domain profile. 147 182 IPR010399 -
Gso20g1200 350 MobiDBLite consensus disorder prediction 294 318 - -
Gso20g1200 350 SMART tify_2 147 182 IPR010399 -
Gso20g1200 350 MobiDBLite consensus disorder prediction 125 142 - -
Gso20g1200 350 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 7 326 - -
Gso20g1200 350 Pfam Jas motif 250 267 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1200 Gso-Chr20 41964528 41970514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1200 1 296 Tify Gene Family AT4G14720 47.557 1.30e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso20g1200 tify 9.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1200 - - gmx:100808970 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1200 20 41964528 41970514 Gso10g2182 10 48839515 48845380 GST