Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1197 ATGGCTGGTAGGTTGCCTGGTGTTGGGTTGCTTGCAAGGAAGAGAACAGAGCAGAACCATAGATATGAACACCAACACCATGCCACATGCCGACAATCCTATCACCTTGGAGAATCATCATTGGAACCACCATGGATACCACTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGACAAAGGCTTCACAAGAAGCTTGGACACTTCTTTTCCTCATACAGGTCAAGTGAGAATCCAAGAAAAGAAGGAAAAGTAAACCAAAGCAGCTACGAGAAGAAGGATGGAGGAATAGGTCGGAAGTTGTTAGAGAGTTCATGGTTGTTGCGTGGCAACAAGTTTAAGAAAGATAGAAAAGTGTGTGCTGTGTGCCTAGAAGATTTGGGGCAAGAGCAACAGCTTATGAACCTTTCATGCTCCCATAAGTACCATTCAGCATGCCTTCTTCCCTGGCTTGCAGCCCATCCCCATTGCCCTTATTGTCGAACCCCAGTTCAGCCCTGA 501 0.4651 MAGRLPGVGLLARKRTEQNHRYEHQHHATCRQSYHLGESSLEPPWIPLTVLDETALKARQRLHKKLGHFFSSYRSSENPRKEGKVNQSSYEKKDGGIGRKLLESSWLLRGNKFKKDRKVCAVCLEDLGQEQQLMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQP* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1197 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 166 IPR013083 -
Gso20g1197 166 Pfam Ring finger domain 119 161 IPR001841 -
Gso20g1197 166 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 41 163 - -
Gso20g1197 166 SUPERFAMILY RING/U-box 119 165 - -
Gso20g1197 166 SMART ring_2 120 160 IPR001841 -
Gso20g1197 166 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Gso20g1197 166 MobiDBLite consensus disorder prediction 75 94 - -
Gso20g1197 166 MobiDBLite consensus disorder prediction 73 94 - -
Gso20g1197 166 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 41 163 - -
Gso20g1197 166 CDD RING-H2_PA-TM-RING 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1197 Gso-Chr20 41888024 41890460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1197 112 161 C3H Transcription Factor Family AT3G02340 42.000 4.53e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1197 - - gmx:100527548 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1197 20 41888024 41890460 Gso10g2186 10 48909975 48911707 GST