Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1196 ATGGGGAAGACAGGCAAATGGCTTAGAAACTTGTTGACAACAGGTAAGAAAGACAAGGAAAAGGAGAAATCTACAATCAAGCTGAATTCTTCTTCAAATGGAACAGAAAACTCAACCACTCCAACTTCCTCAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCTCAGCCACTGCCACTACTGCCACAACCACACCAACAACAACTTCCAAGGAATTGAATTTTGTAGAAACAAATGTGACTGCTTCACAGACAGTGCAAACTGACACTGATATTCAGAATGAGCAGAGGAAGCATGTCATGGCTGTGGCTGCAGCCACTGCAGCAGCAGCTGATGCTGCAGTGGCAGCTGCTCAGGCTGTAGCTGCTGTGATCCGTTTGACTTCTACTTCCAATGCAACATCCAAAAGTATTGAAGAGGCTGCTGCCATTAAAATCCAATCTGCCTTTCGCTCTCACTTGGCAAAAAAAGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGGGGTCACTTGGTGAGAAAACAGGCCAAGGCAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCAAATGGGGTCAGAAGGAAAGGCCAATCAAAAGCACAGAAATGCTGCCGAAGATGATTTGCTCAGGCATATATATAATGAAATGGACAGAGGCTTGGAAGACAACATCAAGATTGTAGAGATGGATGTTTGTGAATCAAAAGTTAACTCCAGAAGCAGCAGTGTGTATCATCATGGACATCAAGAACAATATGACAATAGATTTTCCACACATTATTCAACAAATGGTTCCTACACAAAAGAAGAAAAGTACAAGGTATCACCGGCTCCATCAGCATTGACAGAGTCGAGTCCAAGAGCCTGCAGTGGTCATTTTGATGACTGTTTCAGCACAGCACAAAGCAGCCCTCACCCTCAGTTCTACTCTGCAGTGTCAAGATCAGAAGATTCAAAGCACCCTTTTGCTTTCCATAGGCCAGCTTATGCAGAATCCATGTCCTATGACTACCCTTTGTTTCCAAATTACATGGCTAACACCGAATCATCAAGGGCTAAAGTCAGGTCACACAGTGCACCAAAACAAAGACCGGATTCATTCGAGAGGCAACCAAGCCGGCGAAGAGCTTCAGTTGAGGGAAGAAATGTCCCAAGGCCAATGAGGATGCAGAGATCATCTTCACATGTGGGTGCCACTGTCCATAACTACCATTATCCTTGGTCAATAAAGCTCGATAGATCCGCAGTTTCACTCAAAGATATCACGTGGAGATGGGTACTGACTACTGAGAGTGCACCTTGTGCTACACCAAATAGTAGCCACTTTGCAAGAACACCAAAATCTAGAGTTGAGAATTTCAGTTTGCTGAGTTTTTCTCCTTTTTAG 1443 0.4449 MGKTGKWLRNLLTTGKKDKEKEKSTIKLNSSSNGTENSTTPTSSTPKEKKRWSFRRSSASATATTATTTPTTTSKELNFVETNVTASQTVQTDTDIQNEQRKHVMAVAAATAAAADAAVAAAQAVAAVIRLTSTSNATSKSIEEAAAIKIQSAFRSHLAKKALCALRGLVKLQALVRGHLVRKQAKATLRCMQALVTAQARARAQRIQMGSEGKANQKHRNAAEDDLLRHIYNEMDRGLEDNIKIVEMDVCESKVNSRSSSVYHHGHQEQYDNRFSTHYSTNGSYTKEEKYKVSPAPSALTESSPRACSGHFDDCFSTAQSSPHPQFYSAVSRSEDSKHPFAFHRPAYAESMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPMRMQRSSSHVGATVHNYHYPWSIKLDRSAVSLKDITWRWVLTTESAPCATPNSSHFARTPKSRVENFSLLSFSPF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1196 480 Pfam IQ calmodulin-binding motif 145 163 IPR000048 GO:0005515
Gso20g1196 480 Pfam IQ calmodulin-binding motif 170 186 IPR000048 GO:0005515
Gso20g1196 480 Gene3D - 142 196 - -
Gso20g1196 480 PANTHER IQ-DOMAIN 5-RELATED 1 445 - -
Gso20g1196 480 Pfam Protein of unknown function (DUF4005) 340 399 IPR025064 -
Gso20g1196 480 MobiDBLite consensus disorder prediction 27 47 - -
Gso20g1196 480 SMART iq_5 165 186 IPR000048 GO:0005515
Gso20g1196 480 SMART iq_5 142 164 IPR000048 GO:0005515
Gso20g1196 480 MobiDBLite consensus disorder prediction 12 26 - -
Gso20g1196 480 ProSiteProfiles IQ motif profile. 167 194 IPR000048 GO:0005515
Gso20g1196 480 MobiDBLite consensus disorder prediction 56 71 - -
Gso20g1196 480 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 445 - -
Gso20g1196 480 ProSiteProfiles IQ motif profile. 143 171 IPR000048 GO:0005515
Gso20g1196 480 MobiDBLite consensus disorder prediction 370 414 - -
Gso20g1196 480 MobiDBLite consensus disorder prediction 373 400 - -
Gso20g1196 480 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1196 Gso-Chr20 41857013 41859841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1196 1 439 IQD Protein Family AT4G14750 42.857 3.88e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1196 - - gsj:114403894 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1196 20 41857013 41859841 Gso10g2187 10 48918502 48921170 GST