Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1191 ATGCATTCAGAAGGTGGGGTTACACCGAAGATGGGATTGGAAGCTGTACCTTCGAATTCAAAGATGATATGTAGGGAAAACCTTAGCAGCAAAAATATGAATTTTAGAGCCGATAAAATTGATCTGATGAATTTGGATGTCATGCTAGAAAAACACGTCAACAGGATTTTTTCCAAAAGCATTGAGGCAAAAAGGCATAAAGAGTCATGGGAGATTGATTTGACCAAATTGGATTTACAATATTGTGTAGCTAATGGGGCCTATGGCACTGTCTACAGGGGTACTTATGACAATCAAGATGTTGCAGTGAAAGTCTTGGACTGGGGTGAGGATGGTGTTGCCACTGCTGTTGAAATTGCTGCTTTACGAGCATCATTTTGGCAGGAGGTTACTGTATGGCAAAAACTTGATCATCCAAATGTCACAAAATTCATTGGGGCTTCAATGGGCACTTCAAATCTTAAGATTCCCTTACCAAGCTGTGGTCAAAATTCTGTTCCTTCCAAGGCATGTTGTGTTATTGCTGAGTTTCTTCCTGGTGGAACATTGAAACAATACTTGTTTAAAAATAGGCAGAACAAACTTCCATATAATGTTGTGATTCAGCTGGCTTTGGACCTCTCTAGAGGTCTTAGTTATCTACATTCAAAGAAAATTGTTCATCGCGATGTAAAAACTGACAATATGCTGTTAGATGCCAAACAAAATTTGAAAATAGCTGATTTTGGAGTTGCTCGTGTAGAAGCTATAAATCAAAGTGAGATGACAGGTGAAACTGGAACCTATGGATATATGGCACCGGAGGTTTTAAATGGCAAGCCTTACAACAGAAAATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTACTGTAATAGGCCTTATTCAAAGCTAAGCCTTGCTGCTGTGTCACGTGCAGTTATTAATCAGCATTTACGACCAGAGATTCGAAGAAGTTGTCCAAGTGCCTTATCAAACATCATGCGAAAATGCTGGGATGCTAAACCAGAGAAGCGTCCAGAAATGCATGAGGTGGTGGAAATGTTAGAAGCAATTGATACAAGCAAAGGAGGTGAAATAATATGCAAAGATAAAAATCCATTTTGTTTGTGTTTTGTACCTTCTCGTCGTCCCTAA 1146 0.3909 MHSEGGVTPKMGLEAVPSNSKMICRENLSSKNMNFRADKIDLMNLDVMLEKHVNRIFSKSIEAKRHKESWEIDLTKLDLQYCVANGAYGTVYRGTYDNQDVAVKVLDWGEDGVATAVEIAALRASFWQEVTVWQKLDHPNVTKFIGASMGTSNLKIPLPSCGQNSVPSKACCVIAEFLPGGTLKQYLFKNRQNKLPYNVVIQLALDLSRGLSYLHSKKIVHRDVKTDNMLLDAKQNLKIADFGVARVEAINQSEMTGETGTYGYMAPEVLNGKPYNRKCDVYSFGICLWEIYYCNRPYSKLSLAAVSRAVINQHLRPEIRRSCPSALSNIMRKCWDAKPEKRPEMHEVVEMLEAIDTSKGGEIICKDKNPFCLCFVPSRRP* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1191 381 SMART serkin_6 77 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1191 381 Gene3D Transferase(Phosphotransferase) domain 1 180 368 - -
Gso20g1191 381 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Gso20g1191 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 18 373 - -
Gso20g1191 381 Gene3D Phosphorylase Kinase; domain 1 66 161 - -
Gso20g1191 381 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 18 373 - -
Gso20g1191 381 ProSiteProfiles Protein kinase domain profile. 77 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1191 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gso20g1191 381 CDD STKc_MAP3K-like 86 352 - -
Gso20g1191 381 PRINTS Tyrosine kinase catalytic domain signature 175 188 IPR001245 GO:0004672|GO:0006468
Gso20g1191 381 PRINTS Tyrosine kinase catalytic domain signature 213 231 IPR001245 GO:0004672|GO:0006468
Gso20g1191 381 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672|GO:0006468
Gso20g1191 381 PRINTS Tyrosine kinase catalytic domain signature 323 345 IPR001245 GO:0004672|GO:0006468
Gso20g1191 381 Pfam Protein tyrosine and serine/threonine kinase 80 352 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1191 Gso-Chr20 41804259 41809261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1191 27 381 MAP Kinase Kinase Kinase AT3G22750 68.539 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso20g1191 PK_Tyr_Ser-Thr 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1191 - - gmx:100807899 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1191 20 41804259 41809261 Gso1g2018 1 56638282 56642262 PCT
Gso20g1191 20 41804259 41809261 Gso11g0060 11 512345 515965 PCT