Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1188 ATGTATCCCAGGGAAGCTGAAATCGCTGGTTTTCACCCCACTGAAATTGGTTTCAATCTGCAGATGTCCTCTTCCACATATGACTCCTCTAACCTTTTCCCTAACTTCCCTTCGTCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCCACACCCTTCTTGATGACCACCCTCTTGTTGTTCCCGCCGGCCTCAGACATGATCCTCCATTACTCCCTGAAGAAACCGTTGCCAATTTTGCAGTTGTAGCTGACTGCACTGCCGCCATGCTTGAACACGATGCAGCAAACACTAACTATGGTTCCCACTATGGTAGCAGCGTTTCCAATTTTCTCACCCAGAAACCTGCTGCAGCCACAGCCAAAAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGGAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCTTCGATTGGCTCTTCACAAAGTCTGAGAATGCAATCAAAGAACTAGCCCGAAGTAAGCATACCGGCAGTGTTAGTCGGGGTGACATTAAGTATTCCCGCTACCCGTCTGTGGATTCAAACAACAACAACAAATCATTGGTGGATGGTGGTGATGCTTCCCGAGGGAGGAAGTTGAAATGGGCACAGAGGGATGATGTTTGTGTTCAGAACAAAAAAGAGTCAAGGGAAAGGGCAAGGGCAAGGGCAAGAGAAAGGACTTGTTACAAGATGTGTAGCTGTAGTAGAAGGGTGCAGCAGAAGGACTCTGATGAAAGGTTCCCTGCAACTACAAACACTCAAATGCTACACCAATTGAGGTCTTCCATTCAGCCTGAACTTGAAGATCAACCTCGTGCAAGATGGGTTCAGCCTTATTATAATAACCCTTATTTCATTGATAATGAAGCACCAAGAAATGGCTTTAACGTCATCGAAGAATCTATTATGATAAAAAGGAACATGAAGCCTTCATCTCACCAAAACCTTGTGATCCCTAGGGATGCAAGTTTCAACAACAATGAGTTCCCCCTATTACCCTATTCCAGTACTACTCCAAACTGGGATAGTACTAATGGGGCCGTTAACTTTGGTGGAATAAGCACGATGAATCTATCTACATGTTTCATGAACCCGTGGTTTATTGTACAAGATATGGAAACATGCATGGATCAGCAGGTTACTGATGTTCTGACTGGAGCATGA 1254 0.4458 MYPREAEIAGFHPTEIGFNLQMSSSTYDSSNLFPNFPSSSYPILPFLIDPENDFASHTLLDDHPLVVPAGLRHDPPLLPEETVANFAVVADCTAAMLEHDAANTNYGSHYGSSVSNFLTQKPAAATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTFDWLFTKSENAIKELARSKHTGSVSRGDIKYSRYPSVDSNNNNKSLVDGGDASRGRKLKWAQRDDVCVQNKKESRERARARARERTCYKMCSCSRRVQQKDSDERFPATTNTQMLHQLRSSIQPELEDQPRARWVQPYYNNPYFIDNEAPRNGFNVIEESIMIKRNMKPSSHQNLVIPRDASFNNNEFPLLPYSSTTPNWDSTNGAVNFGGISTMNLSTCFMNPWFIVQDMETCMDQQVTDVLTGA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1188 417 ProSiteProfiles R domain profile. 243 260 IPR017888 -
Gso20g1188 417 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 25 391 - -
Gso20g1188 417 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 391 IPR005333 GO:0003700
Gso20g1188 417 Pfam TCP family transcription factor 126 262 IPR017887 -
Gso20g1188 417 ProSiteProfiles TCP domain profile. 128 186 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1188 Gso-Chr20 41739921 41743576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1188 121 262 TCP Transcription Factor Family AT1G67260 42.405 2.75e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso20g1188 TCP 4.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1188 - - gmx:100806832 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1188 20 41739921 41743576 Gso10g2197 10 49027721 49029144 GST
Gso20g1188 20 41739921 41743576 Gso16g1622 16 36880212 36882095 PCT