Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1147 ATGGAACTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAGAAACGGAAGCTCGACGAGGAGCAGCACCACGAGGACCGCCAGATCTTGCCGGCGCCGCCCACCGCCGACGAGCGCGCCGCACTCCTATCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACAGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGGTGTTGGTGAAGCATCTTCAAGCGCCGCCTCTCAGTGACCTTGTCCAGCATCCGTTGCCGTTTGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTTGCCGTCAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCAGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAACATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGCTCATTTGCTTGATTTTGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATAGTCGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTCCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGAAGATTGGCCCAGGACCCACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGTTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAAAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTAGCCAAAACGTTGAAAAGATTAGAGGAGAAGATTCATGGTCGTGTGCTGAACCATTTGTTATATCTCATGCGAGCTTCAGAAAAGGGCTGTCAAAGACAAGTTGCTTTGGCTCTTGCACATCTTTGCTCTTCAGATGATCAGAGAATAATTTTTATCGATCACTATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTAAGCAAGTTAGCCAATAAAGCCTTGACCTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATCGAATTTGTCTTCTTGCATCATCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGATTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCTAGATCTTCTCCGAGCAGCCAATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGCCAGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTTCAAGGCCAGGGCACTCTCTTCTGATTCAGCGCATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCTCATGACAACCGACTGTAG 2061 0.4571 MELQRRQDQSLSQRKGQKRKLDEEQHHEDRQILPAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVNVIVEGGAIPVLVKHLQAPPLSDLVQHPLPFEHEVEKGSAFALGLLAVKRHRNGLTSRAINSLIRRAADAITNLAHENSNIKTRVRMEGGIPPLAHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRASEKGCQRQVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALSKLANKALTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEIFELMMRFVYCGSVDVTLDIALDLLRAANQYLLEGLKRLCEYTIAQDISPENVSSMYELSEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRIIPEIRNYFVKALTKANSHDNRL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1147 686 Pfam Armadillo/beta-catenin-like repeat 291 330 IPR000225 GO:0005515
Gso20g1147 686 Pfam Armadillo/beta-catenin-like repeat 207 246 IPR000225 GO:0005515
Gso20g1147 686 Pfam Armadillo/beta-catenin-like repeat 172 204 IPR000225 GO:0005515
Gso20g1147 686 MobiDBLite consensus disorder prediction 1 35 - -
Gso20g1147 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Gso20g1147 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 302 344 IPR000225 GO:0005515
Gso20g1147 686 Gene3D - 143 248 IPR011989 -
Gso20g1147 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Gso20g1147 686 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 682 - -
Gso20g1147 686 SMART BTB_4 519 616 IPR000210 GO:0005515
Gso20g1147 686 MobiDBLite consensus disorder prediction 1 38 - -
Gso20g1147 686 SUPERFAMILY POZ domain 511 613 IPR011333 -
Gso20g1147 686 Gene3D - 249 393 IPR011989 -
Gso20g1147 686 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 682 IPR044282 -
Gso20g1147 686 Gene3D - 39 142 IPR011989 -
Gso20g1147 686 SMART arm_5 249 289 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 447 487 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 291 331 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 165 205 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 83 163 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 207 247 IPR000225 GO:0005515
Gso20g1147 686 SMART arm_5 332 372 IPR000225 GO:0005515
Gso20g1147 686 Pfam BTB/POZ domain 512 614 IPR000210 GO:0005515
Gso20g1147 686 Gene3D - 394 501 IPR011989 -
Gso20g1147 686 ProSiteProfiles BTB domain profile. 519 586 IPR000210 GO:0005515
Gso20g1147 686 SUPERFAMILY ARM repeat 149 487 IPR016024 -
Gso20g1147 686 CDD BTB_POZ_ARIA_plant 506 621 - -
Gso20g1147 686 Gene3D Potassium Channel Kv1.1; Chain A 502 645 IPR011333 -
Gso20g1147 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 176 211 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1147 Gso-Chr20 41249925 41258474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1147 185 486 U-box Gene Family AT3G46510 25.413 8.57e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso20g1147 BTB 6e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1147 - - gmx:100796391 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1147 20 41249925 41258474 Gso10g2230 10 49395010 49404323 GST
Gso1g2042 1 56829408 56836593 Gso20g1147 20 41249925 41258474 PCT
Gso11g0039 11 325154 333531 Gso20g1147 20 41249925 41258474 PCT
Gso20g1147 20 41249925 41258474 Gso1g2042 1 56829408 56836593 PCT
Gso20g1147 20 41249925 41258474 Gso11g0039 11 325154 333531 PCT