Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1145 ATGGAGAAGGAGAATGAGCTCCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTACCTCTCCCCCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAACAAACATGGTGATGGGGGGATTTCCAGAGAGGATTTGATGACGGATCTTGAAGATGCACTGTCAAAGCAGCGTCCAAATTGTGTGTCTGGTTTCAAATTGGAGCAAGCAAGGGATAATCGGTATCGGAGTCAGGTTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACCAAGTGCTTGCTTGAACTTTATGGACTAAAGCTGGCAGAGTTGCAGATGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGCCGTCCATTGTATGGTGTTGGAGATCCATTTGCTGTGGATGCTGATGATCAATTAAGGAAGAAACGAGAGGCTGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGAAAATTTTTTGCCGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTGTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGGGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAATATTCAAATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACTGGAGTCAGATGCTTCTAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATTTGATAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGAGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCGTCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCTGATAGCACATCTTATGGAACACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTGCTGCCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGCATCACTGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGCAGTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAATCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGATATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTCTCTCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTACATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGTGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTTTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTCGTGGGCGATTATGATATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTAGACTTATGGACACTCTCGAAGTCTACTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAACCTTCTACGAAAATTTAATGCTCCTGACTCCCCGTACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAATTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCCCATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTATTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGTCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAGATGGATGAAGAGAGAAGACAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATGAACAAAGATGATAAGGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAATGGGGAAGACATATCAAAGTTTTCAGGTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCACAAGCCAGTGATAATACAGGAGCAGAAGAAAGTTTAGAGTTGAAGACTGAAAGTGTTCCCATGGAAAATGAGCGAACAAGTGAAGATAGTTTCCATGTGACCCCTCCCGCAAAGAGATTCAATCCTGAAGGAACATTCCTGAAACAGACATACGAGGATGTTGGAAGTGGTTTGAATCACCATTTGTTATCATGGAATACTCACAAAAAGAAAAGGTCAAGCTTTCTTGGCCAAGGTTCATTATCTGAAACTAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3222 0.4196 MEKENELHAKTLICALNLLSRDLPLPPHILNSVSSIYRNKHGDGGISREDLMTDLEDALSKQRPNCVSGFKLEQARDNRYRSQVQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAVDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKYSNGIEPLEDSEADLLESDASKNGVSKESPLDEDIDLIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWVNEFTTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWQYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPVKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPMNKDDKAKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHHSSDSIAQASDNTGAEESLELKTESVPMENERTSEDSFHVTPPAKRFNPEGTFLKQTYEDVGSGLNHHLLSWNTHKKKRSSFLGQGSLSETRGHSSNGRANWN* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1145 1073 Pfam SNF2-related domain 375 663 IPR000330 GO:0005524|GO:0140658
Gso20g1145 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 550 IPR014001 -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 319 341 - -
Gso20g1145 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 686 853 IPR001650 -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 1053 1073 - -
Gso20g1145 1073 Coils Coil 887 907 - -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 992 1009 - -
Gso20g1145 1073 SMART ultradead3 368 561 IPR014001 -
Gso20g1145 1073 CDD SF2_C_SNF 674 807 - -
Gso20g1145 1073 SMART SnAC_2 889 949 IPR029295 GO:0042393
Gso20g1145 1073 SMART helicmild6 712 796 IPR001650 -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 959 975 - -
Gso20g1145 1073 Gene3D - 603 903 IPR027417 -
Gso20g1145 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 850 IPR027417 -
Gso20g1145 1073 Pfam Helicase conserved C-terminal domain 683 796 IPR001650 -
Gso20g1145 1073 Coils Coil 172 192 - -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 959 1019 - -
Gso20g1145 1073 Pfam Snf2-ATP coupling, chromatin remodelling complex 890 949 IPR029295 GO:0042393
Gso20g1145 1073 Gene3D - 342 596 IPR038718 -
Gso20g1145 1073 PANTHER SNF2/RAD54 HELICASE FAMILY 48 1003 - -
Gso20g1145 1073 PANTHER ATP-DEPENDENT HELICASE BRM 48 1003 - -
Gso20g1145 1073 MobiDBLite consensus disorder prediction 312 343 - -
Gso20g1145 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 597 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1145 Gso-Chr20 41220648 41233050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1145 679 824 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.17e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso20g1145 SNF2_N 3.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1145 - - gmx:100796912 2132.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1145 20 41220648 41233050 Gso10g2233 10 49419467 49429456 GST