Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1142 ATGCAAGACTTTTTGGGCTCCCTTCGCCGCTCCTTGGTTTTCCGCCCCGGCGGTGACGATTCACCTTTTGCCGGAATCGCCAACAAGCTCGGCTCCGCCATTCGCAAATCGCGAATCGCCCTCGAACCTCCTCCTCCGATACGGTGGCGCAAGGGCGAGTTGATCGGTTCCGGCGGCTTCGGTCACGTCTACATGGGAATGAACCTCGACTCCGGGGAGCTTATTGCCATCAAACAGGTTTTAATTGCACCTGGTAGCGTATTCAAGGAGAATACACAGGCTAATATTCGGGAGCTCGAAGAAGAAATCAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTAGATACTTGGGAACCGCTAGAGAGGAGGACTCCTTAAATATTCTGCTGGAATTTGTACCTGGTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCCGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACGATAACGGGATTATTCACAGGGATATAAAGGGTGCCAACATTCTAGTTGATAACAAAGGGTGCATTAAACTCACAGACTTTGGGGCATCCAAGAAAGTTGTTGAACTGGCTACCATCAACGGTGCAAAGTCAATGAAGGGCACACCACATTGGATGTCTCCTGAAGTTATTTTACAGACAGGACATACAATCTCCACTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAGGAGGTTTCAGCTCTTTTCTATATCGGGACAACTAAATCTCATCCACCCATACCTGAACATCTGTCTGCTGAGGCAAAGGACTTTTTGCTGAAATGCTTCCACAAGGAACCAAATTTAAGGCCTTCTGCATCAGAATTGTTACAGCATCCATTCATCACCTGCAACTATCATGGATCTTATTCAATATTACGCAGTTCAATCAGGGACTCTTGCAATAAGATGGCAACATATGGAATGAACTCTAGAAACTTCTTGGATTCTGTCCAGGGATCAACTTGCACGGGCTTAAAGGATGTTTGTCAGATAGATAGCATACAATTCTCAACTGTGTATCATAAAGCAGATTCCTACCAGAGAGCAAGCAACAATGATGATGACATGTGTGAGATGGATGAAGATGACTTTTTCATTGATTCATCAGTAAAATCGAAATCTCTATTGGCTTCTGATGATATGAAGAGTTTCAATCCTATGTGCAAACCTTTGGATGACCGGCCTTGCAATTTTGATGAAACCCAATATTTGGAGAAAAGCAGACCAAACTTGCCATTTTCAAGTGAGGCTCTAGGAACTGAAGATGATGATGAAGTTACTGAGTCTAAAATTAGAGACTTCCTGGATGCTAAGGCCCTTGAACTGAAGAAGCTCCAAACACCTCTTTATGAAGAATTCCGTAGCATATCAAATGCAGCCATTGCTCCAGCTCCCATCAAAGTTGCCAAGAGTAAAGTTATGTCAGATGTCTCAAATGTAACATCATCAATAGGCAGGTCAGCTAGTCAGGCTTGGAGACGATTCTCAATGGTTGGCAGTGCTAATGTTGCAAGCCCTGGTGGGAGTCATACCAAATACCGATCAAAGCTTAGTGGTGCTCACTGTCGACCTTTGCAGGAAATTCAACCATCTGATCTTAATCAATCAAAGGAGACTCTTCATAATGCTGAGCTGGAATCATCTAGTGTAAGCTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGAGCTTGAATGGAAGCGAGAGATGATGCGTCAGGCCGGAATTGGAGGGAAGATAACATCTCCAAAGGATCGTAAATTTTATGGAGACTGA 1884 0.439 MQDFLGSLRRSLVFRPGGDDSPFAGIANKLGSAIRKSRIALEPPPPIRWRKGELIGSGGFGHVYMGMNLDSGELIAIKQVLIAPGSVFKENTQANIRELEEEIKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHDNGIIHRDIKGANILVDNKGCIKLTDFGASKKVVELATINGAKSMKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTKSHPPIPEHLSAEAKDFLLKCFHKEPNLRPSASELLQHPFITCNYHGSYSILRSSIRDSCNKMATYGMNSRNFLDSVQGSTCTGLKDVCQIDSIQFSTVYHKADSYQRASNNDDDMCEMDEDDFFIDSSVKSKSLLASDDMKSFNPMCKPLDDRPCNFDETQYLEKSRPNLPFSSEALGTEDDDEVTESKIRDFLDAKALELKKLQTPLYEEFRSISNAAIAPAPIKVAKSKVMSDVSNVTSSIGRSASQAWRRFSMVGSANVASPGGSHTKYRSKLSGAHCRPLQEIQPSDLNQSKETLHNAELESSSVSSSFSERQRKWKEELVEELEWKREMMRQAGIGGKITSPKDRKFYGD* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1142 627 ProSiteProfiles Protein kinase domain profile. 49 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1142 627 SUPERFAMILY Protein kinase-like (PK-like) 48 313 IPR011009 -
Gso20g1142 627 Pfam Protein kinase domain 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1142 627 CDD STKc_MAPKKK 48 312 - -
Gso20g1142 627 PANTHER MAP KINASE KINASE KINASE 33 522 - -
Gso20g1142 627 Coils Coil 89 109 - -
Gso20g1142 627 Gene3D Transferase(Phosphotransferase) domain 1 48 343 - -
Gso20g1142 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Gso20g1142 627 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Gso20g1142 627 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 33 522 - -
Gso20g1142 627 SMART serkin_6 49 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1142 Gso-Chr20 41171469 41180170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1142 1 615 MAP Kinase Kinase Kinase AT3G06030 54.614 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso20g1142 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1142 - K20606 gmx:100795863 1207.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1142 20 41171469 41180170 Gso10g2236 10 49468074 49476894 GST