Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1138 ATGTTCTCTCAAAACGTGATTCTCCCTCCCGAAAACCCTAGACCCACGGCGTTCGCTTCCAAACCCATGAGCAATGAGATCGCGAAGCCTCTGCCGTCGATTCTCGTTGGCCGCTTCAAGGCTCTACTCAAGCAGCGCGACGACGAACTCCGAGTCGCCGCCGGCGACCCCGTACCGCCGGCGTCCACCGACGAAATCGTCCAGATTTACGAACTCCTCTTGTCGGAACTCACGTGCAATCTGAAACCTATCATCACCGATCTCACAATTATTGCCGAACAGCAGAGGGAGCACGCAAAAGGCATCGCTGACGCAATTTGCGCTCGGATTCTCGAGGTGCCAGTAGATCAAAAGCTTCCTTCACTCTATCTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAGATACTTCTCTTTACGTCTTCCTGAAGTTTTCTGTGAGGCGTACAGGCAGATTCAGCCTACTTTGCATTCTGCTATGCGCCATCTTTTTGGTACTTGGTCAAAAGTCTTTCCACCTTCAGTCCTGCGCAAGATTGAAACTGAGTTGCAATTTTCTCAAGCAGTTAATACTCAATCATCAACCCTGAATCCTGTCAGGGCTTCTGAATCATCTCGACCAAGCCACGCCATACATGTTAATCCAAAATACTTGCGGCAGTTGGAGCGCTCAACTGTGGATAGTGCTAGTAAGACACATCAATTTTTATCAAGCAGTAGCAGCCTTGGAATATCCTCGTCGTCCCCTTCAAGAATTGGAGTTGATAGGCCTTTGTCTGCATCTATGGATGAATATGCAGTGGACAATTCTGCTGTCAGGTTAATTGAGAGAAACTCGCCTCATCCTGCTGTTGATTATGGAGTAGCCAAAGCATTAGGTAGAGATGTGGATTTGACTGAATGGCAGCAAAAGCAGTATCCTGGTGATGGTCGTAATCGATTTCCAACTTCTGTTACATACAGCCTTAGTAATGGACATCAGCGGCAAAGTCCAAGAGCTTTAATTGATGCATACGGCAGTGACAAAAGCCAAGAAACTTCAAGCAGTAAGCCTTTGTTAGTTGAACGTCTGGATAGAAATGGTATAGACAAAGTGTTGTCAACATCTTGGCAGAATACTGAAGAGGAGGAGTTTGACTGGGAAAATATGAGTCCAACCTTAACAGACCATAGTAGGAATAACAGTTTATTGCCTTCAACTTTTGGTTTCTCTAGGGAAAGGCCTGGCGTTGCAGCTAATGCAACTTTGTCGGAGCAAGATACTAGGAAGGGGTGGTCTAGTGGATCTCAGCTTCCTCCAGTAGATGATTCTTCTGCCATAGCAGAAGATGCATTTGCCTCTTCGACTTTTCGTCGCACACCCCCGGGTCAGGTACCTGGATCCCAAAATCAAATCAATCATAGCCTGGGCTCCTCTCAACCTCATGATGCTTGGAAGATTTCACATCATCCGTCTAACATTTTTAGTAATAGGGGGCGAGCAAGGAATCTTATGATCCCTCCTATGGACAACATTCGCAATACAGATAATAACCCGTATTGGGTTCGACCATCAATGTCGAGGATGGAAGCTCGGCCATCAGTTTTGCCAGCACCTTTTGAAATGAGGCCTTCTGTAAATGTGAATGTCACTAGACCGCCCATCATAAATCCAATAAATCCATTGCAAAAACATGTTAGGAGTCAGTTCAATGCAATAAATACTAGTAATCCTATTGCAAACCATGTAAATAAATCTTCATTTATGCCAAAACAGTCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTCAAAGATACATCAGTTGCCTAATCAGCTTCCTGGAGTAATTTCTTCCAACCAGCAAAATCATGGGCAGGCACCACAACTACAGTTTTTTCCATCTCAGGATCCATCAACCTCACAATTTTGTCATGGGAGTTCATTGCAGGGACATGGTGCTTCTATAAGTACAGCCATGTCAAATCCCTTACCAGTTATACCATTCCCTTTACCATTTCAAAGTATTGCAAATAACCCTTTACATTTACAGGGTGGAGCCCATCCATCTTTACCTCCAGGTCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCAAATGTTGGTGCATATATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCGCAAGGTGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGGTTCGTCATGAGTCTGCAGTCAATGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTGCGATTCAAATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAACCCGTAAGCAGAAACCCTCTCGGAAGTGGTTTGTTAGTGACAGGATGTGGCTCAGTGGTGCAGAGGCATTGGGAACAGAATCAGCTCCAGGTTTTTTGCCAACAGAAACCATAGAAGAAAGGAAAGATGATGAAGAGTTGGCAGTGCCTGCAGAAGAAGACCAGAATACATGTGCATTATGCGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATCGAGGAGCTGTATACCTCAATGCACCTACGGGAACAACAGCAGGCATGGATAGGACTCAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGAATCTAATATGGCCACCTCTGAAGATCTTGGACCAGATGAAAAGGGTGCCGATGAAGAGGGTTCCCAAAGGAAACGAATGCGAAGTTGA 2814 0.4481 MFSQNVILPPENPRPTAFASKPMSNEIAKPLPSILVGRFKALLKQRDDELRVAAGDPVPPASTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQIQPTLHSAMRHLFGTWSKVFPPSVLRKIETELQFSQAVNTQSSTLNPVRASESSRPSHAIHVNPKYLRQLERSTVDSASKTHQFLSSSSSLGISSSSPSRIGVDRPLSASMDEYAVDNSAVRLIERNSPHPAVDYGVAKALGRDVDLTEWQQKQYPGDGRNRFPTSVTYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVERLDRNGIDKVLSTSWQNTEEEEFDWENMSPTLTDHSRNNSLLPSTFGFSRERPGVAANATLSEQDTRKGWSSGSQLPPVDDSSAIAEDAFASSTFRRTPPGQVPGSQNQINHSLGSSQPHDAWKISHHPSNIFSNRGRARNLMIPPMDNIRNTDNNPYWVRPSMSRMEARPSVLPAPFEMRPSVNVNVTRPPIINPINPLQKHVRSQFNAINTSNPIANHVNKSSFMPKQSFDSVENKDASISKIHQLPNQLPGVISSNQQNHGQAPQLQFFPSQDPSTSQFCHGSSLQGHGASISTAMSNPLPVIPFPLPFQSIANNPLHLQGGAHPSLPPGRPPAPSQMIPHPNVGAYMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKVRHESAVNALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKTRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEERKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRTQLGPIIHAKCRSESNMATSEDLGPDEKGADEEGSQRKRMRS* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1138 937 SUPERFAMILY ENTH/VHS domain 62 189 IPR008942 -
Gso20g1138 937 MobiDBLite consensus disorder prediction 308 333 - -
Gso20g1138 937 Gene3D - 59 188 IPR008942 -
Gso20g1138 937 MobiDBLite consensus disorder prediction 306 334 - -
Gso20g1138 937 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 29 912 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso20g1138 937 ProSitePatterns Zinc finger C2H2 type domain signature. 771 791 IPR013087 -
Gso20g1138 937 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 29 912 - -
Gso20g1138 937 CDD CID_Pcf11 70 187 - -
Gso20g1138 937 SMART 558neu5 65 187 IPR006569 -
Gso20g1138 937 Pfam CID domain 81 181 IPR006569 -
Gso20g1138 937 ProSiteProfiles CID domain profile. 62 190 IPR006569 -
Gso20g1138 937 MobiDBLite consensus disorder prediction 906 937 - -
Gso20g1138 937 MobiDBLite consensus disorder prediction 454 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1138 Gso-Chr20 41146536 41153240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1138 705 937 C2H2 Transcription Factor Family AT4G04885 67.382 5.23e-103 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1138 K14400 - gmx:100794796 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1138 20 41146536 41153240 Gso10g2239 10 49494960 49501613 GST