Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1136 ATGGAGATGTCATTACAGAGAACATCCTCGGAGAATAATTCGGGAAGGAACCGTGAGGAACAGGAACCTTCGAACAAAGAAACCACCATGGAAGCTCCTGCTTCCGGTGACGACGACCAAGATCTCGAAGAAGGATTCAAAAGGAGGCGCCACACCCGCCACACACACCACCAAATTTCGGAGATGGAATCTTTCTTCAAGGGTTGCCCTCACCCTGATGAAAAGCAAAGGAAAGCGCTTGGTCGCGAGCTCGGATTGGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAAGTGAAGACGCAACAAGAACGATATGAAAACAATCTTCTGAGGGTTGAAAATGACAAGCTTCGAGCAGAAAACCGTAGGTACAGGAATGCACTAGCTAATGCTTTATGCCCTAGCTGTGGAGGCCCTACTGCTCTTGGAGAGATGTCCTTTGACGAGCAGCAGTTGAGGATCGAGAATGCACGATTAAAAGAGGAGATTGCTAGTATGTCAGGACCTGCGGCCAAGCATGCTGGAAAATCTGGAAGCAATTCGTACTGTAACATGCCATCTCAAAACCAGATGCCTTCGCGCTCGCTAGATCTGGGAGTTGGTAACAACAACAAGAACAACAACTATGTAGCTGTAGCACAAGCACAACCTGCAGCCATGGTTGGGGAAATATATGGTGGCAATGATCCTCTTAGGGAACTCCCCCTTTTTTCTTGTTTTGATAAAACTTTAATTGGGGAGATTGGTCTGGTGGCAATAGAGGAAATCAACCGGTTGTCTCTGTCTGGAGATCCTTTGTGGGTCCCTGGCAACTACGGCAGTGAAGTTGTAAATGAAGATGAATACCTGAGGGTTTTCCCTAGGGGCATAGGTCCAACACTCTTGGGCGCAAGAACCGAATCTTCTAGGCAAACAGCCATAGTTATCATGCATCATATGAAACTCGTTGAGATGCTTATGGATGTCAATCAATGGTCAAACATGTTTTGCGGCATCGTTTCAAGGGCGGTAACACACGAAGTGCTGTCAACTGGAGAAACTATAAGATACGATGGTGCCTGCCAAGTGATGTCAGCTGAGTTTCAGGTTCCTTCACCCCTTGTTCCTACTCGTGACAACTATTTCATCAGGTTCTGTAAGAAGCACCAAGGACAATCGTGGGCGGTGGTTGATTTTTCAATGGATCATCTGCGACCTGGTGCAATCACAAAAATTCGAAGACGACCCTCTGGTTGCATAATTCAAGAATTGCCAAATGGTTACTCAAAGGTCATATGGGTTGAACATGTAGAGGTGGACGACAGCGAGGTGCATAATCTTTACAAAAATTTGGTTGATTCTACCCTTGCGTTTGGAGCTAAACGTTGGGTTGCAGCAATAGATAGGACATGCGAACGTCTTGCTAGTGCAATGGCCACCAACATACCCCAAGGGGCACTTTGTGTGATAACAAGTCACGAGAGTCGGAAAAGCATGATGAAGCTGGCTGAAAGAATGGTATTGAGCTTTTGTACTGGCGTTGGTGCTTCAACTGCAAATGCCTGGACACCACTACCAAGTGGTCTTGAAGATGTTAGGGTCATGACCAGAAAGAGCGTTGATGATCCAGGCAGACCTCCTGGTATAGTGCTCAGTGCTGCAACTTCTCTCTGGCTCCCAGTTCCTGCAAGGAGAGTTTTTGAGTTTCTTAGATCAGAAAACACAAGAAATCAGTGGGACATTCTGTCAACCGGGGCTCAAGTGAACGAACTTGCACATATTGCTAACGGGAGAGACCATGGAAATTGTGTCTCTCTTCTTCGAGTGAATACTCAGAATGTGGGCCAGAACAATATGCTGATACTTCAAGAGAGTTTCATTGATGCTACAGGCTCATTTGTGATTTATGCTCCTATTGATGTAGCTGCCATAAATGTTGTGTTGGGAGGTGGTAATCCAGATTATGTGGCCCTGCTCCCTTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGGACTGAACGGAGGGCCCGGGCCCATATGTGAGGCTGGATCCGGAGGAGGCTGTCTTCTCACAGTTGCGTTTCAGATACTGGTGGATTCAGCTCCGACTTCGAAAATCTCTGTTGGTTCCGTGACAACTGTTAACAGTTTGATAAAGAGAACAGTTGAAAAGATCAGAGATGCAGTGTCGCTTGATGGCAACTAA 2196 0.4672 MEMSLQRTSSENNSGRNREEQEPSNKETTMEAPASGDDDQDLEEGFKRRRHTRHTHHQISEMESFFKGCPHPDEKQRKALGRELGLEPLQIKFWFQNKRTQVKTQQERYENNLLRVENDKLRAENRRYRNALANALCPSCGGPTALGEMSFDEQQLRIENARLKEEIASMSGPAAKHAGKSGSNSYCNMPSQNQMPSRSLDLGVGNNNKNNNYVAVAQAQPAAMVGEIYGGNDPLRELPLFSCFDKTLIGEIGLVAIEEINRLSLSGDPLWVPGNYGSEVVNEDEYLRVFPRGIGPTLLGARTESSRQTAIVIMHHMKLVEMLMDVNQWSNMFCGIVSRAVTHEVLSTGETIRYDGACQVMSAEFQVPSPLVPTRDNYFIRFCKKHQGQSWAVVDFSMDHLRPGAITKIRRRPSGCIIQELPNGYSKVIWVEHVEVDDSEVHNLYKNLVDSTLAFGAKRWVAAIDRTCERLASAMATNIPQGALCVITSHESRKSMMKLAERMVLSFCTGVGASTANAWTPLPSGLEDVRVMTRKSVDDPGRPPGIVLSAATSLWLPVPARRVFEFLRSENTRNQWDILSTGAQVNELAHIANGRDHGNCVSLLRVNTQNVGQNNMLILQESFIDATGSFVIYAPIDVAAINVVLGGGNPDYVALLPSGFAVLPDGPGLNGGPGPICEAGSGGGCLLTVAFQILVDSAPTSKISVGSVTTVNSLIKRTVEKIRDAVSLDGN* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1136 731 Gene3D - 310 470 IPR023393 -
Gso20g1136 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 728 IPR042160 -
Gso20g1136 731 Pfam START domain 257 470 IPR002913 GO:0008289
Gso20g1136 731 SUPERFAMILY Bet v1-like 491 722 - -
Gso20g1136 731 CDD homeodomain 58 106 IPR001356 GO:0003677
Gso20g1136 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 728 - -
Gso20g1136 731 MobiDBLite consensus disorder prediction 1 42 - -
Gso20g1136 731 SUPERFAMILY Bet v1-like 305 472 - -
Gso20g1136 731 SMART START_1 251 470 IPR002913 GO:0008289
Gso20g1136 731 SMART HOX_1 47 109 IPR001356 GO:0003677
Gso20g1136 731 CDD START_ArGLABRA2_like 246 469 - -
Gso20g1136 731 ProSiteProfiles START domain profile. 242 473 IPR002913 GO:0008289
Gso20g1136 731 Coils Coil 99 131 - -
Gso20g1136 731 SUPERFAMILY Homeodomain-like 43 111 IPR009057 -
Gso20g1136 731 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Gso20g1136 731 Gene3D - 35 117 - -
Gso20g1136 731 Pfam Homeodomain 48 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1136 Gso-Chr20 41115471 41121678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1136 9 730 Homeobox Transcription Factor Family AT4G21750 61.816 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso20g1136 START 1.4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1136 K09338 - gmx:100793758 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1136 20 41115471 41121678 Gso10g2241 10 49515695 49521683 GST
Gso1g2050 1 56891672 56898886 Gso20g1136 20 41115471 41121678 PCT
Gso11g0031 11 239685 247110 Gso20g1136 20 41115471 41121678 PCT
Gso20g1136 20 41115471 41121678 Gso1g2050 1 56891672 56898886 PCT
Gso20g1136 20 41115471 41121678 Gso11g0031 11 239685 247110 PCT