Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1120 ATGGGTTCTTTTCATTTTTTCCTTCTGCTCCTAACTTTCTTTTCTCTCTTTGTTCACACCTCTCCCTCCCCTATCATCCAAGCAGCTATCGATCAAGGTACCAAAGCCTACTATAACTGCACAAGGAACAGCACTTTTGCTGCCTATAGCTCTTACCGTTCTAACGTCAAAACACTTCTAGATTTTCTCTCCTCCAATAGCACCAACAATGCCAGATTCTACAACACTACAGTTTCTAGCAAAGACACTGTTTACGGTAGCTTCCTATGTAGAATAGACACCACTCCAAAACACTGCCAAGAATGCGTGACACAAGCTGCCAAACTCATATCATCGCTTTGCAAAAATGCTACAGAGGCTATAGTATGGTACCAAGTATGCTATGTGCGCTACTCCGATCGTCGTTTCTTCTCCACCGTGGAGGAGAGTCCTAAACTCTCCTTTATGAATGATAAAGATTATGTGGGTAACGTTGGGCTCTTCAACAACATTGTGTGGGATATGATGAACGATTTGAGAAGTGAAGCAGCAAGTGCTGCTAATAAATCGGCTGATAAGTCTGTGAACATCATTGATAATGAAAAGGTATATGGCTACGCTTGGTGCCTCCCATATCTGTCCAAAGAGAACTGCAGCTGGTGTCTTAGCGATGCCATAGCAGAAATTCCAACTGGTTGCTGCAGAGGAAAATCTGGGGGAACAATAATATATCCCAGTTGTGGTGTTAGATACGAATCATATCAATTCCATAAGGCACAAATCAGGGGTGGTTCGGTGACGCCGCCGCCACTTCCCAGTAGTCCTTCCCCTTTTGCTTCACCAGTTGGGAATGACAGTACCACTCTGGAAACCTTGCGATTTGAATTAGCCAAAATTGAAGCTGCTACAAACAGATTTGCTAAAGAAAACATGATAGGCAAAGGCGGATTTGGAGAGGTTTATAGGGGTATTCTTTTGGATGGGCAAGAAATAGCAGTGAAGAGGCTTACTGGAAGCTCCCGGCAAGGAGCAGTGGAGTTTAAAAACGAGGTTCAGGTTATAGCAAAGCTTCAACACAGAAATTTAGTAAGGTTACTAGGATTTTGCTTAGAAGATGATGAAAAGATACTTATTTATGAGTATGTGCCAAACAAGAGCCTTGACTATTTTTTATTGGATGCCAAGAAGAGAAGACTACTATCTTGGTCTGAACGTCAAAAGATCATTATAGGAATTGCTCGAGGAATTCTATATCTACATGAGGATTCTTGTCTCAAAATAATACATCGTGATTTAAAACCTAGTAATGTTTTGCTAGACAGTAATATGATTCCCAAAATATCAGATTTTGGCATGGCTAGAATTGTTGCTGCAGATCAAATTGAAGAAAGTACGGGCAGAATTGTAGGGACATATGGTTATATGTCCCCCGAGTATGCAATGCATGGACAATTTTCTGTGAAGTCCGATGTGTTTAGTTTTGGAGTCATGGTTCTAGAGATTATTAATGGAAAGAGGAAAGGTTGTTCTTCTGAATCAGATGGTATTGATGACATCCGGAGACATGCTTGGACGAAATGGACAGAGCAAACACCATTGGAACTATTGGATCCTAACATAGGAGGACCATATTCCCGAGAAGAAGTCATCAAATGCATACACATTGGTCTGTTATGCGTTCAAGAAGATCCAAATGATAGACCTACAATGGCAACTGTTGTGTTTTACCTCAACAGCCCTTCAATCAACTTGCCTCCCCCTCGTGAACCAGGATATTTTAAGCGCGATAGAATACAAGACAACAAGACGACCCACAAAGAATTGGATAATATCAGTGATTCCATCAACGGAATTTCTTTAACTAATTTCTTTCCTCGTTAA 1860 0.4108 MGSFHFFLLLLTFFSLFVHTSPSPIIQAAIDQGTKAYYNCTRNSTFAAYSSYRSNVKTLLDFLSSNSTNNARFYNTTVSSKDTVYGSFLCRIDTTPKHCQECVTQAAKLISSLCKNATEAIVWYQVCYVRYSDRRFFSTVEESPKLSFMNDKDYVGNVGLFNNIVWDMMNDLRSEAASAANKSADKSVNIIDNEKVYGYAWCLPYLSKENCSWCLSDAIAEIPTGCCRGKSGGTIIYPSCGVRYESYQFHKAQIRGGSVTPPPLPSSPSPFASPVGNDSTTLETLRFELAKIEAATNRFAKENMIGKGGFGEVYRGILLDGQEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDAKKRRLLSWSERQKIIIGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMIPKISDFGMARIVAADQIEESTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCSSESDGIDDIRRHAWTKWTEQTPLELLDPNIGGPYSREEVIKCIHIGLLCVQEDPNDRPTMATVVFYLNSPSINLPPPREPGYFKRDRIQDNKTTHKELDNISDSINGISLTNFFPR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1120 619 SMART serkin_6 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1120 619 ProSiteProfiles Protein kinase domain profile. 299 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1120 619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 277 619 - -
Gso20g1120 619 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 275 - -
Gso20g1120 619 CDD STKc_IRAK 305 571 - -
Gso20g1120 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Gso20g1120 619 Gene3D Phosphorylase Kinase; domain 1 274 374 - -
Gso20g1120 619 Pfam Salt stress response/antifungal 159 247 IPR002902 -
Gso20g1120 619 Pfam Salt stress response/antifungal 40 133 IPR002902 -
Gso20g1120 619 Pfam Protein tyrosine and serine/threonine kinase 302 567 IPR001245 GO:0004672|GO:0006468
Gso20g1120 619 MobiDBLite consensus disorder prediction 258 277 - -
Gso20g1120 619 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Gso20g1120 619 ProSiteProfiles Gnk2-homologous domain profile. 142 249 IPR002902 -
Gso20g1120 619 Gene3D - 33 136 IPR038408 -
Gso20g1120 619 Gene3D - 145 249 IPR038408 -
Gso20g1120 619 Gene3D Transferase(Phosphotransferase) domain 1 375 576 - -
Gso20g1120 619 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Gso20g1120 619 SUPERFAMILY Protein kinase-like (PK-like) 282 585 IPR011009 -
Gso20g1120 619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 275 - -
Gso20g1120 619 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 277 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1120 Gso-Chr20 40988633 40992091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1120 11 619 Receptor kinase-like Gene Family AT4G05200 41.630 1.37e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1120 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1120 - - gmx:100793219 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1120 20 40988633 40992091 Gso10g2253 10 49622388 49632549 GST