Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1119 ATGGCTTCCTTAAAGCTTGTGTACATCTTTACCCTTCTCAGCTTCATCAATTTCGTAACCACTAAAGCACAGCACGGTCGTGGTTATTCATTCCCCGATTGTTCTTCAAGCATAACCACCCCAAACAGCCCCTACCAATTGAACTTGAGGAGACTTCTGTCTTATCTATCTTCCAACGCCACTTCTAGCAGGCAATTCTATAATACCACCGTCACCAGTAGAAACCACTCCGACAGTACTGTCTACGGAATGTTCTGGTGCGGGGGTGACGTCCCCACCCAGCTTTGTAGCGAGTGCGTCGCAAACGCAACCAAATCAATATTCTCAGATCCAGATTCTTATCCAAATTGTTCCTTGTCCACAGATGCGAGGATTTGGTACGACTACTGCATGATTCGCTTCTCAAACAGTTCTTTCTTCTCCACAGTTGACTCAGGACTAATCAGCGCTGGATGCGACCCTTTCGATGTGTCCAACCAGACAAACTGGGTGAGTGTGCTTTCCAAAACGATTAACGAAGCAGCAGATGAGGCAGCGAATTCGACTGTTAAATATGCAACAAAGGAAGCAAGGATATCCGGAGGATTTCAGAGCCTTTACTGTGAGGCACAGTGCACACCTGACCTCTCACCCCAAGATTGTAGAAAATGTCTAAATGTTGCCATAACCTATTCTCAACAGTCCTGTCAAGGCTTCCTGGACTATTATTCTCTCAGCTGTACAATCATGTGCAATTCCTACCCTTTCTATCGCCCCGGTACTGCTCCGGCACCAAAAGGACTCGTTCCAGCTCTCACGAATTCTTCCAATGTTACAGATCACTCACAAGATCCTGCAGCTTATCTTTCCCACAATTGTTCCATAAACAAGATCACCACCGACATCACTTTTCTGTCAAATCTCAAGACACTTCTCTCCTTCTTGTCTTCTAATTCCACCATCAAAACCAGTTTCAAGACCACCGTCAGCACGATCGGTGGCCTCTTCATGTGCCTCGGGGACCTTTCTCTTACCCTTTGCCAGCTTTGTGTCCAAGATGCAATTCAAAGAATATCCTCAGTGTGCCCTTACTCCAAAGAGGCCATCATTTGGTACAATCACTGCTTGCTTCGCTATAACGATACCCCGTCTTACTCCACACTCAACACAAGTAGCCCTTCCTATCGCGACTTCCACACCCTCAATACTACCAAACCCAACCAGCTTCAAAGCTTCTTCACTTGGACTCTGGCCAATACATTATACAAAGTGCAGTATGAGACAGATGACAGTACCATTAAGAATTATGCAAAAAAAGAAGAAAAACTGAATGATCACCAAACCCTCTATACTCTTGCTCAGTGCACGCCAGATCTAGTTAATCACGATTGCCAAGACTGTCTAGAAAACATTTTCAAATACGAAATTCCATGGTGTTGTATGGAAAGTCCAGAGGGACAAGTACTATATCCTAGCTGCTTTATCAAGTTTGGATTGTCCCCATTTTACACAGATGCTTCCCAAGATGAGGCTCGCAGGCCAGCTACAGGAAATAAGAAACCTAGGCCACGAACAATTATCTTTATTGTAGTCCCGATCGTTATCTCGACGGTACTCTTTTCCTTTTGCTGCTATTTGTTGCGAGGGATAAAAAGAAGAAAAGATAATTATAAAACTCCTCTCACAAAAAACTTTGTTCCGGAAAGTATCACTTTAGAAGGGTTGCAATTTGATTTAACTACCGTTAAAGTAGCAACAAATAATTTTTCGCACGAGAATAAGATTGGTAAAGGTGGATTTGGAGTCGTTTATAAGGGTACTCTTTGTGATGGACGACAAATAGCTGTAAAGAGACTTTCAACAAGTTCTAAGCAAGGCTCAATTGAGTTTGAAAATGAGATTTTATTAATAGCCAAGCTACAACATAAAAATCTTGTGACTTTTATAGGTTTTTGCTCAGAAGAACAAGAAAAAATTCTTATTTACGAATACCTACCAAATGGGAGCCTTGATTACCTTTTATTTGGTACTAGGCAACAAAAGTTAAGTTGGCAAGAGCGTTACAAAATTATAAGAGGAACTGCTTCGGGAATTCTTTACTTGCATGAATATTCTCGATTAAAAGTTATACATCGTGATCTCAAACCTAGTAATGTTTTATTAGATGAAAATATGAATCCAAAATTATCAGATTTTGGCATGGCTAAAATTGTTGAAATGGATCAAGATTGTGGAAATACCAATAGAATTGCAGGAACATATGGTTATATGTCACCAGAATATGCAATGTTTGGACAATTTTCGGAGAAGTCAGATGTTTTTAGTTTTGGTGTCATGATTCTTGAGATTATTACAGGAAAAAAGAATGTAAAATTTAACGAATTAGACAATATTGAAGAAGGTCTTATAGGTTATGTTTGGAGACGATGGAAGGATCAAGAACCATTAAGCATCTTGGATTCACACATAAAAGAAAGTTATTCACAAATGGAAGTTCTTAAATGCATTCATATTGGCTTATTATGTGTTCAGGAAGATCCAAATATTAGACCTACAATGACAACGGTTATTTCATATCTTAATAATCACTCACTTGAATTGCCATCTCCACAAGAACCAGCATTTTTTTGGCACAGGCTTAGAGTGGATCAAGGGATAGCTATGCCACAAGAATCAAGTTCTAATCAAGTGGCCAACGGTTTCACACTATTCTCTATCAATGAAATGTCCATGAGTAATTTTTATCCTCGATAG 2733 0.4014 MASLKLVYIFTLLSFINFVTTKAQHGRGYSFPDCSSSITTPNSPYQLNLRRLLSYLSSNATSSRQFYNTTVTSRNHSDSTVYGMFWCGGDVPTQLCSECVANATKSIFSDPDSYPNCSLSTDARIWYDYCMIRFSNSSFFSTVDSGLISAGCDPFDVSNQTNWVSVLSKTINEAADEAANSTVKYATKEARISGGFQSLYCEAQCTPDLSPQDCRKCLNVAITYSQQSCQGFLDYYSLSCTIMCNSYPFYRPGTAPAPKGLVPALTNSSNVTDHSQDPAAYLSHNCSINKITTDITFLSNLKTLLSFLSSNSTIKTSFKTTVSTIGGLFMCLGDLSLTLCQLCVQDAIQRISSVCPYSKEAIIWYNHCLLRYNDTPSYSTLNTSSPSYRDFHTLNTTKPNQLQSFFTWTLANTLYKVQYETDDSTIKNYAKKEEKLNDHQTLYTLAQCTPDLVNHDCQDCLENIFKYEIPWCCMESPEGQVLYPSCFIKFGLSPFYTDASQDEARRPATGNKKPRPRTIIFIVVPIVISTVLFSFCCYLLRGIKRRKDNYKTPLTKNFVPESITLEGLQFDLTTVKVATNNFSHENKIGKGGFGVVYKGTLCDGRQIAVKRLSTSSKQGSIEFENEILLIAKLQHKNLVTFIGFCSEEQEKILIYEYLPNGSLDYLLFGTRQQKLSWQERYKIIRGTASGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKLSDFGMAKIVEMDQDCGNTNRIAGTYGYMSPEYAMFGQFSEKSDVFSFGVMILEIITGKKNVKFNELDNIEEGLIGYVWRRWKDQEPLSILDSHIKESYSQMEVLKCIHIGLLCVQEDPNIRPTMTTVISYLNNHSLELPSPQEPAFFWHRLRVDQGIAMPQESSSNQVANGFTLFSINEMSMSNFYPR* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1119 910 Gene3D Phosphorylase Kinase; domain 1 545 657 - -
Gso20g1119 910 CDD STKc_IRAK 588 855 - -
Gso20g1119 910 ProSiteProfiles Gnk2-homologous domain profile. 388 495 IPR002902 -
Gso20g1119 910 Pfam Salt stress response/antifungal 34 136 IPR002902 -
Gso20g1119 910 Pfam Salt stress response/antifungal 403 490 IPR002902 -
Gso20g1119 910 Pfam Salt stress response/antifungal 286 374 IPR002902 -
Gso20g1119 910 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 261 - -
Gso20g1119 910 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 269 500 - -
Gso20g1119 910 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 507 899 - -
Gso20g1119 910 ProSiteProfiles Protein kinase domain profile. 582 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1119 910 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 269 500 - -
Gso20g1119 910 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 261 - -
Gso20g1119 910 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 507 899 - -
Gso20g1119 910 ProSiteProfiles Gnk2-homologous domain profile. 279 377 IPR002902 -
Gso20g1119 910 SMART serkin_6 582 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1119 910 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Gso20g1119 910 Gene3D Transferase(Phosphotransferase) domain 1 658 862 - -
Gso20g1119 910 Gene3D - 278 376 IPR038408 -
Gso20g1119 910 Gene3D - 144 249 IPR038408 -
Gso20g1119 910 Gene3D - 386 495 IPR038408 -
Gso20g1119 910 Gene3D - 28 139 IPR038408 -
Gso20g1119 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Gso20g1119 910 ProSiteProfiles Gnk2-homologous domain profile. 27 139 IPR002902 -
Gso20g1119 910 Pfam Protein kinase domain 583 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1119 910 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
Gso20g1119 910 SUPERFAMILY Protein kinase-like (PK-like) 566 879 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1119 Gso-Chr20 40983163 40987864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1119 275 910 Receptor kinase-like Gene Family AT4G05200 40.573 1.40e-162 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1119 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1119 - - gmx:100792696 1849.71