Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1117 ATGTCGTTGCTCGTACTCATCATATTCATCCATTTCTTTTTCAGCTTCTTCAGTTTTGCCATAATCGAGGCCATTGACCTTCACTACCTAAATCACAGTTGTTCAAGTAACAAAACCTTCACCCCAATCAGCTTCTACAATTCCAACCTCCAAACCCTTCTCACATCCCTATCTTCCCATGCCACCACTGCACAATTCTTCAACAGCACAACGGGTGGTGGAGACACCGGCGAAACCATTTATGGCTCCTTCATGTGCCGTGGTGATGTCACCAACCACACGTGCCAAGAATGCGTTAAAACTGCAACCCAACAAATAACTCTACGGTGTCCCAACTCCAAAGATGCTTTAATTTGGTACCACGAATGTTTGGTCCGTTACTCCAACAGTTGTTTTTTCTCCACCATGGAGGAATGGCCTAGGTTCGACCTCTTGGATTATTATAACGTAACTAAGAATTCAACAAAGGAAGGAAGTTACGGGTGGTTGTTAGCTAAAACGTTGAGTGATGCAGTGGGTGAGGCTGCGAACGCTGGCCCTGAGGGTACCATGAAATTTGCAACAAAAAACGCGACCTTGTCTGGATCTCAGAGTTTGTATACTCTAGTTCAGTGCACGCCGGATCTATCAAGCAAAGATTGCAGTAAGTGTTTGGGTGATATTATGAGAGATATTCCTTTATGTTGTCTTGGAAAGTGTGCGATGGTTCTATATCCAAGCTGCACTTTGATGTTTGGGTTAAGTCGTTTCTACAGAGACGTCGTTGCTCTTGGAGTTGTTGGTTCTAATATTGGTACACAAGAACCAGAACCTTCAGGAAACAAAAACAGTTCATCACGACCAATTGTTATAGTTGTCATCCTTCTCATTTTGGCAACGCTAAGCTTTTTGCAATGTTATTTCTTACGAAGAAGAGCAAGAAAGCGTCATTATAATATTCTTCTAAGAGAAAACTTTGGTCGTGAAAGTGTCACTCTAGAGGGATTGCAATTTGAGTTGGCTATAATTAAAACAGCAACAAATAACTTTTCACTCGAAAACAAGATTGGAAAAGGTGGATTTGGCGAAGTTTACAAGGGTATTCTTCCTTGTGGACGACACATTGCTGTTAAAAGACTATCAACAAGTTCTCAACAAGGTTCGGTTGAATTCAAAAATGAGATTTTATTGATAGCAAAATTACAACATAAAAACCTTGTGGAGTTAATAGGTTTTTGCCTAGATATGCAAGAGAAGATTCTTATATATGAATTCATGCCGAACGGGAGCCTTGATAAGTTTTTATTTGGTACTCAACAAAACAGTATAAGTTGGTCTAAGCGCTATAAAATTATAGAAATGATTGCTCGAGGAGTTCTTTATTTACATGAATATTCTCGACTTAAAATTATACATCGTGATCTCAAACCTAGTAATATTTTATTAGACGAACATATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTGTTGAAATAGATCAAGATCGTGGAAAAACCAAAAGAATAGTTGGAACATGGGGTTATATGTCTCCAGAATATATAATGTTTGGACAATTTTCTGAAAAGTCAGATGTTTTTAGTTTTGGAGTCATGGTTTTAGAGATTATTACAGGAAAAAGGAATATAAATTCACATGCATCACCCTATATGTCAAATGGTCTCTTGAGCTATGTTTGGAGACAGTGGAAGGACCACACACCATTGAGCATATTGGATCCAATATTGAAAGAAAGTTATTCCCAAATTGAAGTCACTAAATGTATTCAAATTGGTTTACTATGTGTTCAAGAAAATAAAAACAATAGACCTACTATGACAAAAGTTGTTTCATATCTTGATGGCCACACACTCTTGCCATCTCCACTGAAACCAGCATTTTTCTTGCTGGACAAGATCCATCAAAATATAGCTACACAACATATTTCTGTGAATGAGATGTCTATAAGTACATATTGTGCTAGAATCCCGTTCATACACTGCGCCTTCTCTGATTACTGCCCGTTTACGCGCATTTGCATGCCCTTCACTTATTTCTTCGACTCAGTGAAGAAAATTTCTCGGCATAACAGAATCATGATTACCAAGTCCAAACAGAATCTAACTCTGTTCCAACTTTGCACCCTTTTACTCACCATAGCAGAAACCTCGGCATCAGTGTTCAACAACGTTAGCTGCACGAGCAACAAGACTTTCACTCCAAACAGCACCTTCAACACCAACCTCAACACCCTTCTCTCCTACCTTTCCTCAAACGTAACCAACAACGTTAGATTCTTCAACGCAACCGTAGGGAAAGATTCGAACACCGTCTATGGCCTCTACATGTGCCGTGGAGACGTGCCGTTTGCTCTATGCAGAGAGTGTGTGGGTTTTGCAACACAAACAATACCTTCGTCATGTCCCACATCAAAAGAAGCTGTGATTTGGTACAACGAGTGTTTGTTGCGCTACTCTTACAGGTTCATCTTCTCTAAAATGGAAGAGTGGCCAAGGCACAAGATCAATATTCCATTGGGGGATCCTGTGGTTTTGCATAGTAATGGATTCTACACTGCGTTAGGATCCATTTTCGATGAATTACCAAATAAAGCAGCACTGGATCTTAGTGAGTCTAATGGATATGCCGTTAAGCAAGAAAATGCTTCTGGCAGTGTAACACTGTATGGTCTCGCGCAGTGCACGCCGGACTTGGCTGCCGGAGACTGCAAACTGTGTGTTGCCGATGCGGTGGCCGAGTTTGTCAAGTCTTGTTGCGGAGGGAGCATAGGGGCGAGTGTTCTGTTTCCCAGTTGCATTGTAAGGTATGAGACGTATCCGTTTTATCAGCATTCGGGAACCTCTGCGCCAACAATGATTCAGCGTGGAAGAAATATTGGAACTGAAGTGCTTGTGATCGTTGTTGTCTTGCTTGTGGTTTTGGCGATGCTTTTTGGCTTTAGCTATTGTTTCATCCGGATAAAAGCGAGAAAGAAACGCAAGGCCAGTGACAGAGAAAACTTTGGGCCAGAACTCACTGTCTTGGAGTCTTTGGAATTTGATTTGGCTACAATTGAAGCAGCCACAAACAAGTTTTCTGAAGACCGCAGGATAGGCAAAGGGGGTTATGGAGAAGTCTACAAGGGAATCCTTCCTAACGGAGAAGAAGTAGCTGTAAAGAGATTATCAACAAATTCTAAGCAAGGAGGGGAGGAATTCAAAAATGAAGTGTTGTTAATAGCCAAACTTCAACACAAAAATTTGGTGAGATTAATAGGATTTTGCCAAGAAGACAGAGAGAAAATACTTATCTATGAGTATGTGCCTAACAAGAGTCTTGACCACTTCTTATTTGATTCCCAAAAGCACAGACAATTAACTTGGCCGGAGCGGTTTAAAATCGTAAAAGGAATTGCAAGAGGTATTCTTTATCTACATGAAGATTCTCGTCTTAAGATTATACACCGTGATATCAAACCAAGCAATGTTCTATTGGACAATGGCATCAATCCAAAAATCTCTGATTTTGGAATGGCAAGGATGGTAGCTACAGACCAAATTCAAGGATGCACGAATAGAGTTGTGGGCACATATGGTTATATGTCTCCTGAATATGCAATGCATGGACAATTTTCTGAGAAGTCTGATGTATTCAGTTTTGGAGTTATGGTTCTTGAGATTATTAGTGGCAAGAAGAACTCTTGTTCTTTTGAATCATGTCGTGTTGATGACCTATTGAGTTATGCATGGAATAACTGGAGGGATGAATCACCATATCAATTGCTGGATTCAACTCTGCTAGAATCTTATGTTCCAAACGAAGTGGAAAAGTGTATGCAGATTGGTTTATTGTGTGTGCAAGAAAATCCAGATGACAGGCCAACAATGGGAACAATTGTTTCATATCTTAGCAATCCTTCATTTGAAATGCCATTCCCTCTAGAACCAGCATTTTTTATGCATGGCAGAATGAGAAGACATTCAGCTGAACATGAATCATCTTCAGAGCATATGCCAAAAGTGAAAAGCACCATGGCAGCAACAATAGGGATAACAAATGTAAGATTCACTTCAACACGATTCCGTCCTGAGCAAACATCATTAGAATTCAATGATCAACCACTCACTACTCAAAATCAAAGCACAATTCACTACTTACTAGAACTGTACCTGAAGGGCGAGACTTCACAACCGGTGTGGCCAATATTTTAG 4194 0.4008 MSLLVLIIFIHFFFSFFSFAIIEAIDLHYLNHSCSSNKTFTPISFYNSNLQTLLTSLSSHATTAQFFNSTTGGGDTGETIYGSFMCRGDVTNHTCQECVKTATQQITLRCPNSKDALIWYHECLVRYSNSCFFSTMEEWPRFDLLDYYNVTKNSTKEGSYGWLLAKTLSDAVGEAANAGPEGTMKFATKNATLSGSQSLYTLVQCTPDLSSKDCSKCLGDIMRDIPLCCLGKCAMVLYPSCTLMFGLSRFYRDVVALGVVGSNIGTQEPEPSGNKNSSSRPIVIVVILLILATLSFLQCYFLRRRARKRHYNILLRENFGRESVTLEGLQFELAIIKTATNNFSLENKIGKGGFGEVYKGILPCGRHIAVKRLSTSSQQGSVEFKNEILLIAKLQHKNLVELIGFCLDMQEKILIYEFMPNGSLDKFLFGTQQNSISWSKRYKIIEMIARGVLYLHEYSRLKIIHRDLKPSNILLDEHMNPKISDFGMARIVEIDQDRGKTKRIVGTWGYMSPEYIMFGQFSEKSDVFSFGVMVLEIITGKRNINSHASPYMSNGLLSYVWRQWKDHTPLSILDPILKESYSQIEVTKCIQIGLLCVQENKNNRPTMTKVVSYLDGHTLLPSPLKPAFFLLDKIHQNIATQHISVNEMSISTYCARIPFIHCAFSDYCPFTRICMPFTYFFDSVKKISRHNRIMITKSKQNLTLFQLCTLLLTIAETSASVFNNVSCTSNKTFTPNSTFNTNLNTLLSYLSSNVTNNVRFFNATVGKDSNTVYGLYMCRGDVPFALCRECVGFATQTIPSSCPTSKEAVIWYNECLLRYSYRFIFSKMEEWPRHKINIPLGDPVVLHSNGFYTALGSIFDELPNKAALDLSESNGYAVKQENASGSVTLYGLAQCTPDLAAGDCKLCVADAVAEFVKSCCGGSIGASVLFPSCIVRYETYPFYQHSGTSAPTMIQRGRNIGTEVLVIVVVLLVVLAMLFGFSYCFIRIKARKKRKASDRENFGPELTVLESLEFDLATIEAATNKFSEDRRIGKGGYGEVYKGILPNGEEVAVKRLSTNSKQGGEEFKNEVLLIAKLQHKNLVRLIGFCQEDREKILIYEYVPNKSLDHFLFDSQKHRQLTWPERFKIVKGIARGILYLHEDSRLKIIHRDIKPSNVLLDNGINPKISDFGMARMVATDQIQGCTNRVVGTYGYMSPEYAMHGQFSEKSDVFSFGVMVLEIISGKKNSCSFESCRVDDLLSYAWNNWRDESPYQLLDSTLLESYVPNEVEKCMQIGLLCVQENPDDRPTMGTIVSYLSNPSFEMPFPLEPAFFMHGRMRRHSAEHESSSEHMPKVKSTMAATIGITNVRFTSTRFRPEQTSLEFNDQPLTTQNQSTIHYLLELYLKGETSQPVWPIF* 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1117 1397 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Gso20g1117 1397 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1054 IPR017441 GO:0005524
Gso20g1117 1397 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 640 - -
Gso20g1117 1397 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 702 1325 - -
Gso20g1117 1397 Pfam Protein tyrosine and serine/threonine kinase 1029 1297 IPR001245 GO:0004672|GO:0006468
Gso20g1117 1397 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Gso20g1117 1397 ProSiteProfiles Gnk2-homologous domain profile. 721 824 IPR002902 -
Gso20g1117 1397 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1117 1397 SMART serkin_6 1026 1302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1117 1397 CDD STKc_IRAK 1032 1297 - -
Gso20g1117 1397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1147 1159 IPR008271 GO:0004672|GO:0006468
Gso20g1117 1397 ProSiteProfiles Gnk2-homologous domain profile. 832 942 IPR002902 -
Gso20g1117 1397 SUPERFAMILY Protein kinase-like (PK-like) 328 638 IPR011009 -
Gso20g1117 1397 ProSiteProfiles Protein kinase domain profile. 1026 1302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1117 1397 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Gso20g1117 1397 Gene3D - 844 942 IPR038408 -
Gso20g1117 1397 Gene3D - 720 823 IPR038408 -
Gso20g1117 1397 Gene3D - 26 132 IPR038408 -
Gso20g1117 1397 Gene3D - 143 250 IPR038408 -
Gso20g1117 1397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gso20g1117 1397 Gene3D Transferase(Phosphotransferase) domain 1 1102 1303 - -
Gso20g1117 1397 Gene3D Transferase(Phosphotransferase) domain 1 419 619 - -
Gso20g1117 1397 SUPERFAMILY Protein kinase-like (PK-like) 1012 1325 IPR011009 -
Gso20g1117 1397 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Gso20g1117 1397 Pfam Salt stress response/antifungal 727 820 IPR002902 -
Gso20g1117 1397 Pfam Salt stress response/antifungal 850 940 IPR002902 -
Gso20g1117 1397 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Gso20g1117 1397 CDD STKc_IRAK 349 616 - -
Gso20g1117 1397 ProSiteProfiles Protein kinase domain profile. 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1117 1397 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 702 1325 - -
Gso20g1117 1397 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 640 - -
Gso20g1117 1397 Pfam Protein kinase domain 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1117 1397 Gene3D Phosphorylase Kinase; domain 1 986 1101 - -
Gso20g1117 1397 Gene3D Phosphorylase Kinase; domain 1 307 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1117 Gso-Chr20 40960123 40975083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1117 13 630 Receptor kinase-like Gene Family AT4G05200 43.887 8.17e-166 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1117 PK_Tyr_Ser-Thr 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1117 - - gsj:114402116 2701.39