Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1116 ATGGCATGCAAGAGCAAGACTCCATATATGATATATCCAACCAGCTTATATATTATATATGTTAGTGCTGTGAAACAACTAAAGCACATAAACCCTGCCATGGCTTGGAATTCCTCTTTCAAGCTCCTCTTTCTCTTTGTCTTTGTTAGCTTCCTCTGTTTTGCAACAACTAAAGCACAGGGCCCTAATTTTCTTTACCAGGATTGCCCAAGCAACCAAACCACAGCCAACAGCACCTTCCAAATAAACATCAGGACCCTCTTCTCTTCACTATCTTCCAACGCCACCACCAACAATGTATTCTACAACTCCACAGTGACGGGAACAAACCCCTCTGACACTGTCTATGGACTTTTCATGTGCAGGGGTGACGTCCCATTTCAGCTGTGTGGACAGTGCGTTATAAACGCAACCCAGAAACTATCATCAGACTTACAGTGCTCCTTGTCCAAACAAGCTGTGATCTGGTACGACGAGTGCATGGTTCGCTATTCCAACCACTCCTTTTTCTCCACCGTAGACACAAGGCCTGCTATTGGCCTGTTGAACAGCGCTAATATCTCAAACCAGGCAAACTTCATGCGTTTGATGTTCGACACCATGAACGAAACAGCAGATGAAGCAGCTATTGGTGCCAAGAAATACGCCACGAAGCAAGCAAACATATCTGGGTTTCAGACCCTCTATTGTCTGGTTCAGTGCACGCCGGACTTGTCAACCCAGGGTTGTAGAAGTTGTCTTAGTGATGCCATAGGGCTCCTTCCACGGTGCTGTGAAGGAAAACAAGGAGGGAGAATTCTAAATCCCAGCTGTAATGTTAGGTACGAATTGTACCCTTTCTTTCGCACCAACACCATTGCTTCCTCCCCAGCCCCTACGCCTACACCATCAGTCTCTGTTCCTCCAACTCCAACCACTTCTTCTAACTCGGGAGGAAGTGGTGGAATTTCATCGGGTACAATAGTTGCAATTGTGGTTCCTATTGCAGTGGCCGTGGTGATATTTGTTGTGGGCATTTGGATCTTATGCAAAAGAGCAGCAAAGAAGCGTAACTCTGAACAAGACCCAAAAACTGGAACTGAGATCAGTGCCGTGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACACAAAAATTCTCAGAAGCTAACAAGCTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCAAGCGGACAAGAAGTGGCTGTCAAGAGACTCTCTAAAATCTCTGGACAAGGTGGGGAAGAATTTAAAAATGAAGTAGAGATTGTTGCAAAGCTTCAACACAGGAATTTGGTGAGGCTTCTAGGATTTTGTTTGGAAGGGGAAGAAAAGATACTTGTCTACGAATTTGTAGTCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAGAAGCAAAAATCATTGGATTGGACAAGGCGATACAAAATTGTTGAAGGAATTGCTCGAGGCATTCAATATCTTCATGAAGATTCCAGGCTTAAGATTATACATCGTGACCTTAAAGCTAGCAATGTCTTGTTAGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATATTTGGAGTGGATCAAACTCAAGCAAATACCAACAGGATTGTAGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAATACTCTGCTAAGTCTGATGTATATAGTTTTGGAGTCCTAGTTTTGGAGATTTTAAGTGGCAAGAAAAACAGCTCTTTCTATGAAACCGACGTTGCTGAAGATCTATTGAGCTATGCCTGGAAATTTTGGAAGGATGAAACACCCCTGGAGTTGCTAGAACACTCATTAAGAGAATCATATACTCCAAATGAAGTTATCAGAAGCATCCATATTGGTTTGCTTTGTGTCCAAGAAGATCCAGCAGATAGACCTACAATGGCATCAGTAGTTCTCATGCTTTCTAGTTACTCTGTTACTCTACCGGTACCTAATCAGCCTGCATTATTTATGCATAGTAGAACTGAATCAAACATGCTGAAGTGGGTGCAAATTGATCAGTCTATTACCAAGTCAACAACAAAGTCTGTCAATGAGATGTCGCTTAGTGGAGATATTCCTCGATAA 2124 0.4275 MACKSKTPYMIYPTSLYIIYVSAVKQLKHINPAMAWNSSFKLLFLFVFVSFLCFATTKAQGPNFLYQDCPSNQTTANSTFQINIRTLFSSLSSNATTNNVFYNSTVTGTNPSDTVYGLFMCRGDVPFQLCGQCVINATQKLSSDLQCSLSKQAVIWYDECMVRYSNHSFFSTVDTRPAIGLLNSANISNQANFMRLMFDTMNETADEAAIGAKKYATKQANISGFQTLYCLVQCTPDLSTQGCRSCLSDAIGLLPRCCEGKQGGRILNPSCNVRYELYPFFRTNTIASSPAPTPTPSVSVPPTPTTSSNSGGSGGISSGTIVAIVVPIAVAVVIFVVGIWILCKRAAKKRNSEQDPKTGTEISAVESLRFDFSTIEAATQKFSEANKLGEGGFGEVYKGLLPSGQEVAVKRLSKISGQGGEEFKNEVEIVAKLQHRNLVRLLGFCLEGEEKILVYEFVVNKSLDYILFDPEKQKSLDWTRRYKIVEGIARGIQYLHEDSRLKIIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTQANTNRIVGTYGYMSPEYAMHGEYSAKSDVYSFGVLVLEILSGKKNSSFYETDVAEDLLSYAWKFWKDETPLELLEHSLRESYTPNEVIRSIHIGLLCVQEDPADRPTMASVVLMLSSYSVTLPVPNQPALFMHSRTESNMLKWVQIDQSITKSTTKSVNEMSLSGDIPR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1116 707 Pfam Salt stress response/antifungal 189 278 IPR002902 -
Gso20g1116 707 Pfam Salt stress response/antifungal 69 166 IPR002902 -
Gso20g1116 707 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Gso20g1116 707 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 35 705 - -
Gso20g1116 707 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 35 705 - -
Gso20g1116 707 SMART serkin_6 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1116 707 Gene3D Phosphorylase Kinase; domain 1 343 457 - -
Gso20g1116 707 ProSiteProfiles Protein kinase domain profile. 382 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1116 707 ProSiteProfiles Gnk2-homologous domain profile. 62 169 IPR002902 -
Gso20g1116 707 MobiDBLite consensus disorder prediction 289 313 - -
Gso20g1116 707 Gene3D Transferase(Phosphotransferase) domain 1 459 661 - -
Gso20g1116 707 CDD STKc_IRAK 388 653 - -
Gso20g1116 707 Gene3D - 61 169 IPR038408 -
Gso20g1116 707 Gene3D - 178 280 IPR038408 -
Gso20g1116 707 PIRSF SRK 263 703 IPR024171 GO:0004674
Gso20g1116 707 PIRSF SRK 31 112 IPR024171 GO:0004674
Gso20g1116 707 ProSiteProfiles Gnk2-homologous domain profile. 175 280 IPR002902 -
Gso20g1116 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Gso20g1116 707 Pfam Protein tyrosine and serine/threonine kinase 385 651 IPR001245 GO:0004672|GO:0006468
Gso20g1116 707 SUPERFAMILY Protein kinase-like (PK-like) 367 677 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1116 Gso-Chr20 40954968 40958727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1116 36 707 Receptor kinase-like Gene Family AT4G05200 53.019 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1116 PK_Tyr_Ser-Thr 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1116 - - gmx:100789354 1307.35