Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1114 ATGGCTTGGAATTCCTCTTTCAAGCTTATCTTTCTCTTTGTCCTTGTTAACTTCCTCAGTTTTGCAACACCTAAGGCACAACAGGTCCCTACTTTTCTTGCCCAGGATTGCCCAAGCAACGGAACCACAGCCAACAGCACCTTCCAAATAAACATCAGGACCCTCTTCTCTTCACTATCTTCCAACGCCATCGCCAACAATGTATTCTACAACTCCACGGTGGCGGGAGCAAACCCCTCTGACACTGTCTATGGACTTTTCATGTGCAGGGGTGACGTCCCATTTCAGCTGTGTGGACAGTGCGTTATAAACGCAACGCAGAAACTATCATCAGACTTACAGTGCTCCTTGTCCAAACAAGCTGTGATCTGGTATGACGAGTGCATGGTTCGCTATTCCAACCGCTCCTTTTTCTCCACCGTAGACACAAGGCCTGCTATTAGCCTGTTGAACACCGCTAATATCTCAAACCAGGCAAACTTCATGCGTTTGATGTTCGACACCATGAACGAAACAGCAGATGAAGCAGCTATTGGTGCCAAGAAATACGCCACGAAGCAAGCAAACATATCTGGGTTTCAGACCCTCTATTGTCTGGTTCAGTGCACGCCGGACTTGTCAACCCAGGGTTGCAGAAGTTGTCTTAGTGATGCCATAGGGCTCCTTCCATGGTGCTGTGAAGGAAAACAAGGAGGGAGAATTCTAAATCCCAGCTGTAATGTTAGGTATGATTTGTACCCTTTCTACCGCACCAACGTCTCTGCACCTCCAACCGATTCTTCTAATTCGGGAGGAGGTAGTGGAATTTCACCGGGGACAATTGTTGCGATTGTGGTTCCAATAACAGTGGCTGTGCTGCTATTTATTGTTGGAATTTGGCTCTTAAGTAAAAGAGCAGCAAAGAAGCGTAACTCTGCGCAAGACCCCAAAACTGAGACTGAGATCAGTGCCGTGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACAGATAAATTCTCTGATGCTAACAAGCTAGGCGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCTAGCGGCCAAGAAGTAGCTGTCAAGAGACTCTCTAAAAACTCTGGACAAGGTGGAACAGAATTTAAGAATGAAGTAGAGGTTGTTGCAAAGCTTCAACACAAAAATTTGGTGAGGCTTCTAGGATTTTGCTTGGAAGGAGAAGAAAAGATACTTGTTTACGAATTTGTAGCCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAGAAGCAAAAATCATTGGATTGGACAAGGCGATACAAAATTGTTGAAGGAATTGCTCGAGGCATTCAATATCTTCATGAAGATTCCAGGCTTAAGATTATACATCGTGACCTTAAAGCTAGCAATGTCTTGTTAGATGGAGATATGAATCCAAAAATCTCGGATTTTGGCATGGCAAGAATATTTGGAGTGGATCAAACTCAAGCAAATACCAACAGGATTGTAGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAATACTCTGCTAAGTCTGATGTATACAGTTTTGGGGTCCTCATTTTGGAGATTATAAGTGGCAAGAGGAACAGCTCTTTCTATGAAACAGATGTTGCTGAGGATCTGTTGAGCTATGCCTGGAAACTTTGGAAGGATGAAGCTCCTTTGGAGTTGATGGACCAATCATTAAGAGAATCATATACTCCAAATGAAGTTATCAGATGCATCCATATCGGTTTACTGTGTGTCCAAGAAGATCCAATAGATAGACCTACAATGGCATCAGTAGTTCTTATGCTTGATAGTTACTCTGTTACTCTACAGGTACCTAATCAGCCCGCATTCTATATAAACAGTAGAACCGAACCAAACATGCCGAAGGGGCTTAAAATTGATCAGTCTACTACCAATTCAACATCAAAGTCTGTCAATGATATGTCGGTTAGTGAAGTAGATCCTCGAATCCCCAAGATGCCTCCTTGCAAGTACTTTGCAATTCCCTCCATTCTCTTCTTCCTCTTAAGCTTCTTAATCTTTCCAACCAAAGCAGCTCCAATTTACAGTTCCCATGCGTGCACAGACTCTTCTAAATACCAACCAAACAGCACATTCCAAACCAACCTCAACCTCCTCCTCTCTTCCCTTTCTTCCAACGCCACCCAAGGCGTCCACTTTTACAAAACAACAGTTGGCAGTGAAACCCCCAACGCCGTCAAGGGCCTCTTCCTCTGCCGCGGAGACACCCTCACCGCCGTGTGCCACGATTGCGTCAACGCCGCAGCCAAAGACCTGACACGCCGGTGCCCAGTTGAGAAAGAGGCCATAATCTGGTACGACGTGTGCATGGTACGCTACTCCAACCAATACTACCTCAACAACATAGTACCCGCAGTGGACATGTCTGACTCCAAAAGCGTGGCTGGCGCTGATCTTGACCGGTTCAACGAGGTGCTGGCGGGATTGTTGAACGCTCTGGCAACGAAAGCTGCGAATTCCGAGGATGAGAAGTTCGAAACAGGGGAAGTGAACTTGACGAGTTCAGTAACCCTTTATGGGTTAGTGCAGTGCACACCAGAGTTGTCCTTGTTCGATTGCAACATGTGTTTCAGAAGCGCCATTGCGTCTGTTCCAAATTGCTGTGATGGGAAACAAGGGGCAAGGGTGTTGCTTCCCGGATGCAATATCAGATATCAAGTGTATCCATTTTACAATAGCACTAAAATATTGGCCACACCGGTTGTGAAGTCCCGTCCTTCAGGACGGAGTCGGGTTGAAGTGATTCTTACATTTGTTATCCCTATTGTTGCTGCCATGGTGCTTTTCACTTTTGGTATATGTCATGTCATGAGAAAGCAAGCAAAGAGTCTGAAACAATTATGGAGGAAAACGTCTTTGGTGTTTAATGAGCACCATGAAATTAAGATTGTTTTGGAAGAAGAAAAAACAATTGGTATTTTGCAGACACTAAAACGAGGGACAGAGATGTTAAACTTGAAATCCTCTTCATCCCACTTGCTACTCCTCTTTCTCTTCACCTTGGTGACTATTGCAAGTGAAGCAGCAGCTCCTATATACAGCGCACATGCCTGCACAGATGATGGACCATTTTACCAACCCAACACAACATACCAAACCAACTTGAAGCTCCTCCTCTCTTCCCTCGTCTCCAACGCCACCCTCCACCAGGGCTTCTTCCTCACCAACATCTCCCTCGGAAACCCCGATGAGGTCAAGGGACTCTTCCTCTGCCGCGGTGACGTCACCCCCTCCGTCTGTCACGACTGCGTCGCCGCCGCGGCAACCAACATCACAGACCTCTGCACCAACCAAACAGAGTCCGTGATCTGGTATGACCAGTGTATGTTGCGCTACTCCAACCTTTCCTTCCTCAACAACATAGTCCCTGGAGTTAACTTGAATTCCGAACAGAACGTCTCTGACTCCAACAATACCGGCTTCATCAATTTTCTTGCGTCCACGTTGAATGGTCTGGCACAGGAAGCCGTGAATTCTCTTTCCGGGAAGAAGTTTGCTACAAAAGAAGCGAATTTCACGAGCTCGATGAAGGTCTACACCTTGGCGCAGTGCAGGCCTGATTTGTCCACCTTTGACTGTAACATGTGCTTCACAAGTGCCATAAGTAACCTCGGTGATGGCAAACGAGGTGCACGATCTCTGCTTCCGAGTTGTAATGTCAGATATGAATTGTACCCTTTTTACAATGTTTCCGCAGTGTCCTCTCACCCAGCCCCAGACCTTCCCCCTCCTCCATCTTCAGGGAAAAACAGTATCTCTATAATCGTGCCAATTGTTGTCCCAATTGTCGTTGTGATTGTACTTTTCATTGTTGGAGTCTGCTTCCTACGTAAGAGGGCAAGCAAGAAGTATAACACTTTTGTCCAGGATTCAATTGTGGATGATCTTACCGATGTGGAGTCCTTGCAATTTGATTTGGCTACAATTGAAGCTGCCACGAATGGATTCTCGGATGAGAACAAGATTGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTATCCTCCCTAACAGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGAAATGAAGCTGCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTGTTGGGATTTTGCTTGGAGGGGAGGGAGAAGATCCTTATCTATGAATACATAACAAACAAAAGCCTTGATCACTTTCTATTTGACCCTGTGAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAATATTATAGTTGGCATTGCTCGAGGAATTCTTTATTTACATGAAGATTCCCAACTTAGAATTATACATCGTGATCTCAAAGCGAGCAATGTTTTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTTCAGGCAGACCAGACTCAAGTAAATACAGGAAGGATAGTAGGGACTTTTGGTTACATGTCTCCAGAATATGCAATGCGTGGGCAGTTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTATATCAATCGAATCAAGCTGATGATCTCTTAAGCTATGCTTGGAAGAATTGGACAGAGCAAACACCTTTGCAGTTTCTGGATCCAACTCTGAGAGGTTCTTATTCAAGAAATGAAGTAAACAGATGCATCCATATTGGTTTATTATGTGTTCAGGAAAATCCATCTGACAGACCTTCGATGGCCACCATTGCACTTATGCTGAACAGTTATTCAGTTACCTTGTCAATGCCACGACAACCAGCATCTTTTCTGCGCGGAAGAAATCTTAACAGGCTAAACCAAGGGCTTGACTCTGATCAGTCTACCACTTGTTCAATTCCATGGTCTGTGAATGAAGTATCCATTACAGACATATACCCTCGCTAA 4980 0.4474 MAWNSSFKLIFLFVLVNFLSFATPKAQQVPTFLAQDCPSNGTTANSTFQINIRTLFSSLSSNAIANNVFYNSTVAGANPSDTVYGLFMCRGDVPFQLCGQCVINATQKLSSDLQCSLSKQAVIWYDECMVRYSNRSFFSTVDTRPAISLLNTANISNQANFMRLMFDTMNETADEAAIGAKKYATKQANISGFQTLYCLVQCTPDLSTQGCRSCLSDAIGLLPWCCEGKQGGRILNPSCNVRYDLYPFYRTNVSAPPTDSSNSGGGSGISPGTIVAIVVPITVAVLLFIVGIWLLSKRAAKKRNSAQDPKTETEISAVESLRFDFSTIEAATDKFSDANKLGEGGFGEVYKGLLPSGQEVAVKRLSKNSGQGGTEFKNEVEVVAKLQHKNLVRLLGFCLEGEEKILVYEFVANKSLDYILFDPEKQKSLDWTRRYKIVEGIARGIQYLHEDSRLKIIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTQANTNRIVGTYGYMSPEYAMHGEYSAKSDVYSFGVLILEIISGKRNSSFYETDVAEDLLSYAWKLWKDEAPLELMDQSLRESYTPNEVIRCIHIGLLCVQEDPIDRPTMASVVLMLDSYSVTLQVPNQPAFYINSRTEPNMPKGLKIDQSTTNSTSKSVNDMSVSEVDPRIPKMPPCKYFAIPSILFFLLSFLIFPTKAAPIYSSHACTDSSKYQPNSTFQTNLNLLLSSLSSNATQGVHFYKTTVGSETPNAVKGLFLCRGDTLTAVCHDCVNAAAKDLTRRCPVEKEAIIWYDVCMVRYSNQYYLNNIVPAVDMSDSKSVAGADLDRFNEVLAGLLNALATKAANSEDEKFETGEVNLTSSVTLYGLVQCTPELSLFDCNMCFRSAIASVPNCCDGKQGARVLLPGCNIRYQVYPFYNSTKILATPVVKSRPSGRSRVEVILTFVIPIVAAMVLFTFGICHVMRKQAKSLKQLWRKTSLVFNEHHEIKIVLEEEKTIGILQTLKRGTEMLNLKSSSSHLLLLFLFTLVTIASEAAAPIYSAHACTDDGPFYQPNTTYQTNLKLLLSSLVSNATLHQGFFLTNISLGNPDEVKGLFLCRGDVTPSVCHDCVAAAATNITDLCTNQTESVIWYDQCMLRYSNLSFLNNIVPGVNLNSEQNVSDSNNTGFINFLASTLNGLAQEAVNSLSGKKFATKEANFTSSMKVYTLAQCRPDLSTFDCNMCFTSAISNLGDGKRGARSLLPSCNVRYELYPFYNVSAVSSHPAPDLPPPPSSGKNSISIIVPIVVPIVVVIVLFIVGVCFLRKRASKKYNTFVQDSIVDDLTDVESLQFDLATIEAATNGFSDENKIGQGGFGVVYKGILPNRQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGREKILIYEYITNKSLDHFLFDPVKQRELDWSRRYNIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTFGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLYQSNQADDLLSYAWKNWTEQTPLQFLDPTLRGSYSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTLSMPRQPASFLRGRNLNRLNQGLDSDQSTTCSIPWSVNEVSITDIYPR* 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1114 1659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Gso20g1114 1659 Pfam Salt stress response/antifungal 1151 1243 IPR002902 -
Gso20g1114 1659 Pfam Salt stress response/antifungal 818 905 IPR002902 -
Gso20g1114 1659 Pfam Salt stress response/antifungal 1041 1132 IPR002902 -
Gso20g1114 1659 Pfam Salt stress response/antifungal 40 134 IPR002902 -
Gso20g1114 1659 Pfam Salt stress response/antifungal 157 245 IPR002902 -
Gso20g1114 1659 Pfam Salt stress response/antifungal 698 794 IPR002902 -
Gso20g1114 1659 ProSiteProfiles Protein kinase domain profile. 1334 1609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1114 1659 MobiDBLite consensus disorder prediction 632 653 - -
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 692 796 IPR002902 -
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Gso20g1114 1659 CDD STKc_IRAK 1340 1606 - -
Gso20g1114 1659 MobiDBLite consensus disorder prediction 634 653 - -
Gso20g1114 1659 Pfam Protein tyrosine and serine/threonine kinase 339 604 IPR001245 GO:0004672|GO:0006468
Gso20g1114 1659 Pfam Protein tyrosine and serine/threonine kinase 1337 1602 IPR001245 GO:0004672|GO:0006468
Gso20g1114 1659 Gene3D Transferase(Phosphotransferase) domain 1 1410 1616 - -
Gso20g1114 1659 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Gso20g1114 1659 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1006 1658 - -
Gso20g1114 1659 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 657 - -
Gso20g1114 1659 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 676 961 - -
Gso20g1114 1659 SUPERFAMILY Protein kinase-like (PK-like) 320 628 IPR011009 -
Gso20g1114 1659 Gene3D Phosphorylase Kinase; domain 1 295 410 - -
Gso20g1114 1659 Gene3D Phosphorylase Kinase; domain 1 1296 1409 - -
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 1139 1245 IPR002902 -
Gso20g1114 1659 SUPERFAMILY Protein kinase-like (PK-like) 1320 1627 IPR011009 -
Gso20g1114 1659 SMART serkin_6 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1114 1659 SMART serkin_6 1334 1609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1114 1659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1006 1658 - -
Gso20g1114 1659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 657 - -
Gso20g1114 1659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 676 961 - -
Gso20g1114 1659 CDD STKc_IRAK 341 607 - -
Gso20g1114 1659 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1114 1659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1455 1467 IPR008271 GO:0004672|GO:0006468
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 1031 1135 IPR002902 -
Gso20g1114 1659 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Gso20g1114 1659 Gene3D - 805 908 IPR038408 -
Gso20g1114 1659 Gene3D - 1143 1245 IPR038408 -
Gso20g1114 1659 Gene3D - 29 137 IPR038408 -
Gso20g1114 1659 Gene3D - 692 796 IPR038408 -
Gso20g1114 1659 Gene3D - 1031 1135 IPR038408 -
Gso20g1114 1659 Gene3D - 144 248 IPR038408 -
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Gso20g1114 1659 ProSitePatterns Protein kinases ATP-binding region signature. 1340 1362 IPR017441 GO:0005524
Gso20g1114 1659 ProSiteProfiles Gnk2-homologous domain profile. 800 908 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1114 Gso-Chr20 40942442 40952824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1114 676 958 Receptor kinase-like Gene Family AT4G05200 39.867 2.71e-56 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1114 PK_Tyr_Ser-Thr 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1114 - - gsj:114402115 3196.37