Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1113 ATGCGCATCTTCAAACCCTCTTCAACCCACTTGCTACTTCTATCTCTCTTCACCTTGCTGCTTACCTTTGCAATTGCAAGTGAAGAAACTCCTATATACAGCGCACATGTCTGCACAAGTGGATCCTATTACCAACCCAACACAACATTCCAAACCAACTTGAACATTCTCCTCTCATCTCTCGTCTCCAACGCCACCCTCCACGACGGCTTCTTCCGCACCACCGTCTCCGAGGTCAAGGGGCTCTTCTTCTGCCGCGGTGACGTCACCCCCTCCCTCTGCCAACACTGCGTCACCGCCGCAGCAAGTAACATCACAATCTACTGCACCAACCAGACACAGTCCATAATCTGGTACGACCAGTGCACGCTGCGTTACTCCAACAATTCCAACCTCGACAACACGTTCCCAAGTGTTAACTTGATAAATGTAGAGAGCGTCTCCGACTCGGACCTTACCCGGTTCAACAATATTCTCGCATCCACGGTGAACGATTTAAAGCATGAGGTCATGAACTCTAATTCGGGAAAGAAGTTTGCTACAAAAGAAGTGAATTTCACGAGCTCAATGAAGCTCTACACCCTGGCGCAGTGCACGCCCGATATGTCCACTTTTGACAGTGACATATGCCTTTCAATGGCCATCAGTACCCTTGGTGATGGAAAACAAGGATCACGGTCCCTGCTTCCGGGTTGTAATATTAGATATGAATTGTACCCTTTTTACAATGTTTCTGCCGTGATCATTCAGCCAGAGCTTACCCCTCCCCCTCCCCCTCCATCTTCAGGGAAAATCAGTATCTCTATAATTGTGGCGATTGTTGTCCCTATTGTCGTTGCGATTCTACTATTCGTTGTTGGCGTCTACTTCCTACGTAAAAGGGCAAGCAAGAAGTATAATACTTTCGCCCAGGATTCAATTGTGGATGATCTTATAGATGTGGAGTCCTTGCAATTTGACTTGGCTATGGTTGAAGCTGCTACAGAAGGGTTCTCAGATGAGAACAAGATTGGCCAAGGTGGATTTGGAGTGGTTTATAAGGGTGTCTTCCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCTGTAGAGTTCAGGAATGAAGCTGCTCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGACAAGAGAAGATCCTTATCTATGAATACATACCAAACAAAAGCCTTGATCGCTTTTTATTTGACCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGGCGCTACAAGATTATTGTTGGCATTGCTCGAGGAATTCAGTATTTACACGAAGATTCCCAGCTTAGAATTATACACCGTGATCTCAAAGCTAGTAATGTTCTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCGGGCAGATCAGACTCAAATAAATACAGGAAGGATAGTAGGGACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAGTTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGAGTTTTATCAATCGAATCATGCTGATGACCTTTTAAGCCATGCTTGGAAGAATTGGACAGAGCAAACACCTTTGGAGTTGCTGGATCCAACACTGAGAGGTTCTTATTCTAGAAATGAAGTCAACAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAATCCATCTGACAGGCCTTCGATGGCCACTATTGCACTTATGCTGAACAGTTATTCAGTTACCATGTCAATGCCACGACAACCAGCATCTCTTCTGCGCGGGAGAGGTCCTAACAGGTTAAACCGAGGGATGGACTCTGATTCGTCTACCTCCAATCAGTCTACCACTTGTTCAATTGCATGGTCTGTGAATGAAGTATCCATTACTGATTTATACCCTCGCTAA 1986 0.4466 MRIFKPSSTHLLLLSLFTLLLTFAIASEETPIYSAHVCTSGSYYQPNTTFQTNLNILLSSLVSNATLHDGFFRTTVSEVKGLFFCRGDVTPSLCQHCVTAAASNITIYCTNQTQSIIWYDQCTLRYSNNSNLDNTFPSVNLINVESVSDSDLTRFNNILASTVNDLKHEVMNSNSGKKFATKEVNFTSSMKLYTLAQCTPDMSTFDSDICLSMAISTLGDGKQGSRSLLPGCNIRYELYPFYNVSAVIIQPELTPPPPPPSSGKISISIIVAIVVPIVVAILLFVVGVYFLRKRASKKYNTFAQDSIVDDLIDVESLQFDLAMVEAATEGFSDENKIGQGGFGVVYKGVFPNGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDRFLFDPVKQRELDWSRRYKIIVGIARGIQYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFRADQTQINTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTEFYQSNHADDLLSHAWKNWTEQTPLELLDPTLRGSYSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTMSMPRQPASLLRGRGPNRLNRGMDSDSSTSNQSTTCSIAWSVNEVSITDLYPR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1113 661 CDD STKc_IRAK 337 603 - -
Gso20g1113 661 MobiDBLite consensus disorder prediction 615 641 - -
Gso20g1113 661 SUPERFAMILY Protein kinase-like (PK-like) 317 622 IPR011009 -
Gso20g1113 661 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1113 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 660 - -
Gso20g1113 661 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Gso20g1113 661 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Gso20g1113 661 Pfam Salt stress response/antifungal 38 128 IPR002902 -
Gso20g1113 661 Gene3D - 32 130 IPR038408 -
Gso20g1113 661 Gene3D - 138 241 IPR038408 -
Gso20g1113 661 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Gso20g1113 661 Gene3D Transferase(Phosphotransferase) domain 1 407 614 - -
Gso20g1113 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 660 - -
Gso20g1113 661 ProSiteProfiles Gnk2-homologous domain profile. 32 131 IPR002902 -
Gso20g1113 661 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Gso20g1113 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Gso20g1113 661 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1113 661 ProSiteProfiles Gnk2-homologous domain profile. 135 241 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1113 Gso-Chr20 40936326 40940217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1113 13 661 Receptor kinase-like Gene Family AT4G05200 46.726 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1113 PK_Tyr_Ser-Thr 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1113 - - gmx:547727 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1113 20 40936326 40940217 Gso10g2255 10 49644011 49647596 GST