Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1112 ATGTTCCTCTTGAACAACCATGTTGATGTTACCTTTCTTCTGTTCCTGTGGCTGTTTGGAATTGGATCCTCATCAGCTTCTATTTACAACGCTAATTACTGTCCAAACAACACATCGTACAATTCCAACCTAACATTCGAAACCAATCTCAAAGTCCTCCTCGCATCTATGGTCTCCAACGTTTCACTGTCTGACGGCTACTATTTCACCGCCATGGGCATGGGGACCACAAGCGTCGCCAACGGCCTACTCCTCTGCCGCGGCGACGTCTCCACCGCCACGTGTCACGACTGCATCTCCACCGCAGCCACAGAGATAACGCGACGCTGCCCCAACAAAACAGAGTCCATAATATGGTACGATGAGTGCATGCTCCGTTTCACCAACCGCTACTTCGCCCCCACCAGCGTCGTGCCAAGAGCAAACTTAATGGACGGCAACAACATCTCTGCCTCCGACTTGGACAGTTTCAATCGCACGCTGTTCGGCTTGTTGAACGATTTGATCGAAGAGGCTGCGAATTCTCGGTTGGCGAGGAAATTCGCCACAGGCCAAAGAGAATTCGCAGGGCACTCGCCGGAGAACACGGTGTATGCCCTGACGGAGTGCGAGCCGGACTTAACGACTACTCAGTGTGAAGAGTGCTTGCGAAACGCCGTTTCTACTCTTCCGTCGTGTTGCGGAGGAAAACAGGGCGCGAGGGCTCTGCTTTCGTATTGCAATGCTAGACACGAATTGTTCAGGTTTTACCATACAAGTGACACGTCAGATTCCCACCGAAGCAAGCAATTGAATTGGTCAGAACGTTACAAAATTATTGAAGGAATTGCACAAGGAATTTCATATTTACATGAACATTCACGATTAAAAGTTATACATCGTGATTTAAAACCTAGTAACGTATTGTTGGATAGCAACATGAATCCAAAAATTTCAGATTTTGGAATGGCAAGGATTGTTGCTATTGATCAACTTCAAGGAAAAACAAATAGAATCGTTGGAACATACGGTTATATGTCGCCGGAATATGCAATGCATGGACAATTTTCAGAAAAGTCAGATGTTTTTAGTTTTGGAGTTATAGTTTTGGAGATAATTAGTGCAAAAAGGAATACTCGTTCTGTTTTTTCGGATCATGATGACCTCTTGAGTTATACTTGGGAACAATGGATGGATGAAGCACCATTAAACATATTTGACCAAAGTATTAAGGCGGAGTTTTGTGATCACAGTGAAGTTGTTAAATGCATCCAAATTGGTTTATTATGTGTACAAGAGAAGCCAGATGACAGACCTAAAATAACACAAGTTATTTCATATCTCAATAGCTCTATAACAGAGTTGCCACTTCCTAAAAAACCGATAAATTCTAGACAAAGTGGAATAGTTCAAAAGATTGCAGTAGGGGAATCGAGTTCAGGTTCAACACCATCTATCAATGAAATGTCCGAATCTAATTTCCGGAAGGCAATTCTATGTGATTACTCTCCCATCAAAAGCAAACATAGATGA 1512 0.4345 MFLLNNHVDVTFLLFLWLFGIGSSSASIYNANYCPNNTSYNSNLTFETNLKVLLASMVSNVSLSDGYYFTAMGMGTTSVANGLLLCRGDVSTATCHDCISTAATEITRRCPNKTESIIWYDECMLRFTNRYFAPTSVVPRANLMDGNNISASDLDSFNRTLFGLLNDLIEEAANSRLARKFATGQREFAGHSPENTVYALTECEPDLTTTQCEECLRNAVSTLPSCCGGKQGARALLSYCNARHELFRFYHTSDTSDSHRSKQLNWSERYKIIEGIAQGISYLHEHSRLKVIHRDLKPSNVLLDSNMNPKISDFGMARIVAIDQLQGKTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIISAKRNTRSVFSDHDDLLSYTWEQWMDEAPLNIFDQSIKAEFCDHSEVVKCIQIGLLCVQEKPDDRPKITQVISYLNSSITELPLPKKPINSRQSGIVQKIAVGESSSGSTPSINEMSESNFRKAILCDYSPIKSKHR* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1112 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Gso20g1112 503 SUPERFAMILY Protein kinase-like (PK-like) 245 441 IPR011009 -
Gso20g1112 503 Gene3D Transferase(Phosphotransferase) domain 1 246 450 - -
Gso20g1112 503 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Gso20g1112 503 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Gso20g1112 503 Gene3D - 141 245 IPR038408 -
Gso20g1112 503 Gene3D - 26 132 IPR038408 -
Gso20g1112 503 Pfam Protein kinase domain 237 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1112 503 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 257 - -
Gso20g1112 503 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 257 476 - -
Gso20g1112 503 ProSiteProfiles Gnk2-homologous domain profile. 139 249 IPR002902 -
Gso20g1112 503 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 257 476 - -
Gso20g1112 503 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 257 - -
Gso20g1112 503 ProSiteProfiles Protein kinase domain profile. 151 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1112 503 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Gso20g1112 503 SMART serkin_6 166 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1112 Gso-Chr20 40929917 40935177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1112 217 453 Receptor kinase-like Gene Family AT4G05200 48.750 1.70e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1112 Pkinase 8.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1112 - - gmx:100305424 528.865