Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1111 ATGTTTTGGCGCAACATGTTGCTCTTCAACAGCCATGTTGATGTTACTGTAACCTTTCTTCTTCTTCTGTTCCTATCTCTATTTGGAATTGGATCATCCTCAGCAGCACCCTTTTACATCGATACTTACTGCCCAAAGAACGCATCGTACAATTCCAACGTAACATTCGAAACCAATCTCAAAGTCCTCCTCGCAACTCTCGTCTCCAACGTTTCCATGTCCGGCTTCTACTACACCTTCATGGGCTTGGGAACCACAAGCGTCGCCAACGGCCAGTTCCTCTGCCGCGGCGATGCCTCCGCCGCCACGTGTCAGGACTGCATCGCCACCGCCGCCAAAGAGATAACGCGACTCTGCCCCAACAAAACAGAGTCCATAATATGGTACGACGAGTGCACGCTCTATTTCACAAACCACTACTTCTCCCGCACCGGCATCGAACCGCGAGCCATGTTGTCGGACGACAGGAACATCTCTGCCTCCGACTTGGACAGCTTCAACCGCACGTTGTTCAGCTTGTTGAACGATTTGGCGGAAGAAGCCGCGAATTCTCAGTCGGCGAAGAAATTCGCCACCGGCCAAAGCCGATTCGACGGGTCCTCGCCGCAGAGAACTGTGTATGCCCTGGCAGAGTGCGCGCCCACCGAAACGAGTACTCAGTGTGAAGAGTGTTTGAAAAATGCCATTTCAACTCTTCCTTCGTGTTGCGGAGGAAAACAGGGAGCGAGGGCTCTGCTTGCGCATTGCGATGTTAGATACGAATTGTTCCTCTTTTACAATACTAGCGGAACGTCAGTTATTTATGCAGGAAATAAGAAATCTGTATCGCGAGTAATCTTGATTGTTGTCCCTGTTGTTGTGTCGGTATTTCTCTTATGTGGTGTCTGCTATTTCATATTGAAACGATCAAGGAAGAGATATAAGACTCTTCTAAGGGAAAATTTTGGGGAAGAAAGTGCCACTTTGGAGGCGTTACAATTTGGCTTGGCCACAATTGAAGCTGCCACAAACAAGTTTTCGTATGAAAGGAGAATAGGTGAAGGTGGATTCGGAGTTGTTTATAAGGGTATTTTTCCCGATGGACGAGAAATAGCTGTTAAGAAACTCTCAAGAAGTTCGGGACAAGGTGCAATTGAATTCAAGAATGAGATTTTATTGATAGCAAAACTTCAACACAGAAATTTAGTGACATTGTTAGGATTTTGTTTGGAAGAGGAAGAGAAAATACTTATTTATGAATTTGTGTCCAATAAAAGTCTCGACTACTTTCTATTTGATCCCTACAAGAGCAAACAATTGAGCTGGTCGGAACGTTACAAAATTATTGAAGGAATTACACAAGGAATTTCATATTTACATGAACATTCACGGTTAAAAGTTATTCATCGTGATTTAAAACCTAGTAATGTATTGTTAGATAGCAACATGAATCCAAAGATTTCAGATTTTGGAATGGCAAGAATTGTTGCTATTGATCAATATCAAGGAAGAACAAATAGGATCGTGGGAACATACGGTTATATGTCTCCGGAATATGCAATGCATGGACAATTTTCAGAAAAGTCAGATGTTTTTAGTTTTGGAGTTATAGTTTTGGAGATAATTAGTGCAAAAAGGAATACTCGTTCTGTTTTTTCGGATCATGATGACCTCTTGAGTTATGCTTGGGAACAATGGATGGATGAAGCACCATTAAACATATTTGACCAAAGTATTAAGGCGGAGTTTTGTGATCACAGTGAAGTTGTTAAATGCATCCAAATTGGTTTATTATGTGTACAAGAGAAGCCAGATGACAGACCTAAAATGACACAAGTTATTTCATATCTCAATAGCTCTATAACAGAGTTGCCACTTCCTAAAAAACCGATAAATTCTAGACAAATTGGAAGAGTTCAAAAGATTGCAGTAGGGGAATCGAGTTCAGGTTCAACACCATCTATCAATGAAATGTTTATTAATTATTATTACGGAGTATAA 1980 0.4172 MFWRNMLLFNSHVDVTVTFLLLLFLSLFGIGSSSAAPFYIDTYCPKNASYNSNVTFETNLKVLLATLVSNVSMSGFYYTFMGLGTTSVANGQFLCRGDASAATCQDCIATAAKEITRLCPNKTESIIWYDECTLYFTNHYFSRTGIEPRAMLSDDRNISASDLDSFNRTLFSLLNDLAEEAANSQSAKKFATGQSRFDGSSPQRTVYALAECAPTETSTQCEECLKNAISTLPSCCGGKQGARALLAHCDVRYELFLFYNTSGTSVIYAGNKKSVSRVILIVVPVVVSVFLLCGVCYFILKRSRKRYKTLLRENFGEESATLEALQFGLATIEAATNKFSYERRIGEGGFGVVYKGIFPDGREIAVKKLSRSSGQGAIEFKNEILLIAKLQHRNLVTLLGFCLEEEEKILIYEFVSNKSLDYFLFDPYKSKQLSWSERYKIIEGITQGISYLHEHSRLKVIHRDLKPSNVLLDSNMNPKISDFGMARIVAIDQYQGRTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIISAKRNTRSVFSDHDDLLSYAWEQWMDEAPLNIFDQSIKAEFCDHSEVVKCIQIGLLCVQEKPDDRPKMTQVISYLNSSITELPLPKKPINSRQIGRVQKIAVGESSSGSTPSINEMFINYYYGV* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1111 659 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Gso20g1111 659 Gene3D - 150 258 IPR038408 -
Gso20g1111 659 Gene3D - 38 141 IPR038408 -
Gso20g1111 659 Pfam Protein tyrosine and serine/threonine kinase 341 610 IPR001245 GO:0004672|GO:0006468
Gso20g1111 659 Pfam Salt stress response/antifungal 162 254 IPR002902 -
Gso20g1111 659 Pfam Salt stress response/antifungal 44 138 IPR002902 -
Gso20g1111 659 ProSiteProfiles Gnk2-homologous domain profile. 146 258 IPR002902 -
Gso20g1111 659 SMART serkin_6 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1111 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Gso20g1111 659 ProSiteProfiles Gnk2-homologous domain profile. 38 141 IPR002902 -
Gso20g1111 659 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 635 - -
Gso20g1111 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 635 - -
Gso20g1111 659 CDD STKc_IRAK 345 611 - -
Gso20g1111 659 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Gso20g1111 659 ProSiteProfiles Protein kinase domain profile. 339 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1111 659 Gene3D Phosphorylase Kinase; domain 1 301 414 - -
Gso20g1111 659 SUPERFAMILY Protein kinase-like (PK-like) 323 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1111 Gso-Chr20 40919938 40924385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1111 9 622 Receptor kinase-like Gene Family AT4G05200 44.462 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1111 Pkinase 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1111 - - gsj:114402937 1262.67