LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1110	ATGTTTCTCTCAAACAAGCATGTTGATGTTACCTTTCTTCTGTTCCTATTTATGTTTGAAATTGGATCATCTTCAGCAGCACCCGTTTACAACGCTAATTACTGCCCAAACAACACATCGTACAATTCCAACGTAACATTCCAAACCAATCTCAGAGTCCTCCTCGCATCCCTCGTCTCCAACGTGTCCCAATCTGACGGTTCCTATAACTCCGCCATGGGAATGGGGACCACAAGCGTCGCCAGCGGCCAATTCCTCTGCCGCGGCGACGTCTCCCCCGCCACGTGTCAAGATTGCATCGCCAGCGCCGCCACGGAAATAACGCGACTCTGCCCCAACAAAACAGAGTCCATAATATGGTACGACGAGTGCACGCTCCGTTTCACCAACCGCTACTTCGCCCCCACCAGCATCGACCCGGGAGCGAGGTTGTCGGACGACAAGAACATCTCTGCCTCCGACTTGGACAGTTTCAACCAGACGTTGTTCGGTTTGTTGAACGAATTGGTGGAAGAAGCTGCGAATTCTCAGTCAGCGAGGAAATTCGCCACCGGCGAAAGCGAATTCGCCGGGTCCTCGCCGGAGAGAACGGTGTATGCCCTGACGGAGTGCGAGCCGAGCCTAACTATTGCTCAGTGTGAAGAGTGTTTGCAAAACGCCGTTTCGACTCTTCCGTCGTGTTGCGGAGGAAAACAAGGCGCCAGGGCTCTGCTTGCGTGGTGCAATGTTAGATACGAGTTGTTTCAGTTTTACAATACTAGCGGCTCGTCAGCACCGTCATCAGGAAATAAGAAATCTGTAGCACGAGTAGTCTTGATTGTTGTCCTTGTTGTTTTGTCGATAATTCTCTTATGTGGTGTCTGCTATTTCATATTGAAAAGATCAAAGAAGAAATCCAACACTCTTCTAAGGGAAAATTTTGGGGAAGAAAGTGACACTTTGGAGTCTTTACAATTTGGGTTGCCCACAGTTGAAGCTGCCACAAAGAAGTTTTCACATGAAAACAGAATAGGTGAAGGTGGATTTGGAGAGGTTTACAAGGGTATTCTTCCAGATGGACGAGAAATAGCAGTTAAAAAACTCTCACAAAGTTCCGGACAAGATCCCCGTAAGAGTTGTGAATTGGATTGGACAACACGCTACAAAATTATTGAAGGAATTACACATGGAATTTTATATCTACATGAACATTCACGGTTAAAAGTTATACATCGTGATCTTAAACCTAGTAATGTATTATTGGATAGCATAATGAATCCAAAGATTTCAGACTTTGGAATGGCAAGGATTGTTGCAATAGATCAACATCAAGAAAAAACAAATAGAATTGTGGGAACATATGGTTATATGTCTCCGGAATATGCAATGCATGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTTATAGTTTTGGAGATAATTAGTGCAAAAAGGAATACTCGTTCTGTTTTTTCGGATCATGATGACCTCTTGAGTTATGCTTGGGAACAATGGAGGGATCAAACGCCATTAAACATATTAGACCAAAATATAAAGGAATCTTGCAATCATAGGGAAGTCATTAAATGCATTCAAATTGGTTTATTATGTGTACAAGAGAAGCCAGAAGATAGACCTACCATGACACAAGTTGTTTCATATCTCAATAATTCTTTAGTTGAGTTGCCATTTCCAAGAAAACCAATCAATTCTAAACAAAATGAAATAGTTCAAAAGATGATAGTAGGAGAATCAAGCTCAGGTTCAGCACTATCAAATAATGGAATGTCTGTCTCCGTACTTAGACAGCTTTGGAATTCTCATCACTCACACAGCGTTGTCCAACCTAGAAAGAGGCCATTGGGTGGTATGACAATTGCATGCTACGCTACTCAAATCGCTCAATATTCGAGACCATGGAACCTGACTCTACGTACTTTCTGTGGATTTAACAATGCAACTGATATGGATCAGTTCAATGAGGGTCTTAGGGGCATAGTGGATGGTCTCAGAAGCAAAGCTGCATCTGGTAATTCCCTTAAGAAGTATGCTGCAGGAAGCGCAGCTGGTCCAAGCTTTCAAGCAGAATTTTCTCGTTAG	2088	0.4306	MFLSNKHVDVTFLLFLFMFEIGSSSAAPVYNANYCPNNTSYNSNVTFQTNLRVLLASLVSNVSQSDGSYNSAMGMGTTSVASGQFLCRGDVSPATCQDCIASAATEITRLCPNKTESIIWYDECTLRFTNRYFAPTSIDPGARLSDDKNISASDLDSFNQTLFGLLNELVEEAANSQSARKFATGESEFAGSSPERTVYALTECEPSLTIAQCEECLQNAVSTLPSCCGGKQGARALLAWCNVRYELFQFYNTSGSSAPSSGNKKSVARVVLIVVLVVLSIILLCGVCYFILKRSKKKSNTLLRENFGEESDTLESLQFGLPTVEAATKKFSHENRIGEGGFGEVYKGILPDGREIAVKKLSQSSGQDPRKSCELDWTTRYKIIEGITHGILYLHEHSRLKVIHRDLKPSNVLLDSIMNPKISDFGMARIVAIDQHQEKTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIVLEIISAKRNTRSVFSDHDDLLSYAWEQWRDQTPLNILDQNIKESCNHREVIKCIQIGLLCVQEKPEDRPTMTQVVSYLNNSLVELPFPRKPINSKQNEIVQKMIVGESSSGSALSNNGMSVSVLRQLWNSHHSHSVVQPRKRPLGGMTIACYATQIAQYSRPWNLTLRTFCGFNNATDMDQFNEGLRGIVDGLRSKAASGNSLKKYAAGSAAGPSFQAEFSR*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1110	695	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	402	414	IPR008271	GO:0004672\|GO:0006468
	Gso20g1110	695	Pfam	Salt stress response/antifungal	154	246	IPR002902	-
	Gso20g1110	695	Pfam	Salt stress response/antifungal	35	130	IPR002902	-
	Gso20g1110	695	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	10	367	-	-
	Gso20g1110	695	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	368	614	-	-
	Gso20g1110	695	SUPERFAMILY	Protein kinase-like (PK-like)	316	566	IPR011009	-
	Gso20g1110	695	Gene3D	Transferase(Phosphotransferase) domain 1	366	564	-	-
	Gso20g1110	695	Gene3D	Transferase(Phosphotransferase) domain 1	318	365	-	-
	Gso20g1110	695	ProSiteProfiles	Gnk2-homologous domain profile.	138	250	IPR002902	-
	Gso20g1110	695	Pfam	Protein kinase domain	381	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso20g1110	695	ProSitePatterns	Protein kinases ATP-binding region signature.	337	360	IPR017441	GO:0005524
	Gso20g1110	695	ProSiteProfiles	Protein kinase domain profile.	253	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso20g1110	695	Gene3D	-	143	250	IPR038408	-
	Gso20g1110	695	Gene3D	-	29	133	IPR038408	-
	Gso20g1110	695	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	10	367	-	-
	Gso20g1110	695	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	368	614	-	-
	Gso20g1110	695	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Gso20g1110	695	SMART	serkin_6	331	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1110	Gso-Chr20	40903937	40917225	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso20g1110	12	563	Receptor kinase-like Gene Family	AT4G05200	40.670	1.42e-152	457

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso20g1110		Pkinase	1e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1110	-		-	gsj:114402923	1348.57