Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1109 ATGGCCATGGTTTCAAGAATGCCTATATTCCTTTGTATCCTTGTCATACTCATATCCATATCTCAATCTAACGCCCAACCAGGATTCTTATACCACTTCTGTATCAATGACAAGGGTAATTACAGTGCTAACAGCACCTACCAGAATAACCTCAACACCCTTTTGTCCAACCTCTCTTCCAACACACAGATTGACTATGGCTTCTACAATTTTTCTTATGGCCAAGAAAGTGACAGAGTAAACGCAATTGGGCTCTGCAGAGGAGATTTTAAGCCAGATGCTTGCCGCAGCTGTTTTAATGATTCCAAAGTGGTTCTCACGCAACTGTGTCCAAATCAGAAGGAGGCAATAGTGTGGTATGACAATTGCATGTTACGCTACTCCAATCGCTCAATATTTAACACCATGGAAGCCTCACCTAGTGCCTACATGTGGAACCCTGGTAACGCAACAGATGTTGATCAATTCAATCAAGTGCTGAGGACCTTGCTATATAGCCTCGTAAGCCAAGGTTCATCAGGGGACTCCCGGCATAAGTTTGCTGCAGCAAATGTTTCAGGACCAAGCTTTCAAACTATATATGGTCTTGTGCAGTGTACACCTGACTTGTCAGAACAAGAATGCACTTCATGCTTGGTTGATGCTATCTCAGAAATTCCACGATGTTGTGATAGCAAGAAAGGTGGTAGAGTTATGAGACCCAGCTGTAACTTCAGATATGAGACATACCCCTTTTACACTCCTACCAATGTCGCAATACCACAAGCACCAGCACCAAAGGTGTCTGCTTTTCCTCCTTCATCAACAGATACATTGTCCCCAGAAGGGAAGAGCAACACATCTCTAATTGTAATAGCAATAGTCGTGCCAATCATTGCCTTTGTCATACTAGTAATTCTTATACTCATCTATTTAAGAATGAGGAGGTCAAGGGAACACATCGAAGTTGAACTTGAAAATGATGATGAAATTAGATCAGCGGAGACATTGCAATTGGACTTCTCCACAATCGTGGCTGCTACCAACAACTTTTCTGATGCAAATGAGCTAGGACAAGGAGGATTTGGACCTGTTTATAAGGGTACGCTCTCCAATGGAAAGGAAGTTGCAGTCAAAAGGTTGTCTAGGAATTCTCTCCAAGGTGACATAGAGTTTAAGAATGAAGTTCTATTAGTAGCCAAGCTTCAGCACAGAAATTTAGTTAAGCTACTAGGATTTTGTTTGGAAAGAAGTGAAAGGCTACTGGTGTATGAATTTGTCCCCAATAAAAGCCTTGATTTCTTCATATTTGATCAAAACAGACGAGCACAATTGGATTGGGAAAAGCGATACAAAATCATAGGAGGCATTGCTAGGGGCCTTGTATACCTTCATGAGGATTCACGATTGAGGATTATTCACCGTGATCTCAAAGCAAGCAACATTCTCTTGGATGCAGAGATGCATCCTAAGATATCAGATTTTGGTATGGCAAGATTATTTGAAGTGGATCAAACTCAGGGAAATACAAGTAGAATTGTTGGAACCTTTGGATATATGGCACCAGAGTATGCAATGCATGGACAATTCTCAGTGAAATCTGATGTTTTTAGTTTTGGTGTGCTGATTCTCGAGATTGTAAGTGGCCAGAAAAACAGTTGGGTATGTAAAGGGGAGAATGCAGGGGATCTACTAACCTTTACATGGCAAAACTGGAGGGGAGGGACAGCCTCAAACATTGTTGATCCCACAATTACTGATGGTTCGAGAAATGAAATAATGAGATGTATCCACATTGCGTTGCTTTGTGTTCAGGAAAATGTGGCTGATAGACCAACCATGGCTTCTGTTGTACTTATGCTTAACAGCTACTCTGTTACGCTTCCATTGCCCTCACAGCCTGCTTTCTTCATTGATAGTAGAAGTTTTCCAGCCATTCAATCAGAAGAGTATAATCCAATGGCAGCAGGAGCATCAGATGAATCAAATGCTCGATCTGTCCAAGAATCAATAAACGAGGCTTCCATTACTGAGCCATTTCCTCGCTAG 2028 0.4167 MAMVSRMPIFLCILVILISISQSNAQPGFLYHFCINDKGNYSANSTYQNNLNTLLSNLSSNTQIDYGFYNFSYGQESDRVNAIGLCRGDFKPDACRSCFNDSKVVLTQLCPNQKEAIVWYDNCMLRYSNRSIFNTMEASPSAYMWNPGNATDVDQFNQVLRTLLYSLVSQGSSGDSRHKFAAANVSGPSFQTIYGLVQCTPDLSEQECTSCLVDAISEIPRCCDSKKGGRVMRPSCNFRYETYPFYTPTNVAIPQAPAPKVSAFPPSSTDTLSPEGKSNTSLIVIAIVVPIIAFVILVILILIYLRMRRSREHIEVELENDDEIRSAETLQLDFSTIVAATNNFSDANELGQGGFGPVYKGTLSNGKEVAVKRLSRNSLQGDIEFKNEVLLVAKLQHRNLVKLLGFCLERSERLLVYEFVPNKSLDFFIFDQNRRAQLDWEKRYKIIGGIARGLVYLHEDSRLRIIHRDLKASNILLDAEMHPKISDFGMARLFEVDQTQGNTSRIVGTFGYMAPEYAMHGQFSVKSDVFSFGVLILEIVSGQKNSWVCKGENAGDLLTFTWQNWRGGTASNIVDPTITDGSRNEIMRCIHIALLCVQENVADRPTMASVVLMLNSYSVTLPLPSQPAFFIDSRSFPAIQSEEYNPMAAGASDESNARSVQESINEASITEPFPR* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1109 675 Pfam Protein tyrosine and serine/threonine kinase 348 612 IPR001245 GO:0004672|GO:0006468
Gso20g1109 675 CDD STKc_IRAK 350 615 - -
Gso20g1109 675 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 645 - -
Gso20g1109 675 Gene3D Phosphorylase Kinase; domain 1 306 419 - -
Gso20g1109 675 SMART serkin_6 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1109 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Gso20g1109 675 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 645 - -
Gso20g1109 675 ProSiteProfiles Protein kinase domain profile. 344 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1109 675 Pfam Salt stress response/antifungal 149 243 IPR002902 -
Gso20g1109 675 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Gso20g1109 675 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Gso20g1109 675 MobiDBLite consensus disorder prediction 645 675 - -
Gso20g1109 675 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
Gso20g1109 675 SUPERFAMILY Protein kinase-like (PK-like) 333 642 IPR011009 -
Gso20g1109 675 Gene3D - 138 245 IPR038408 -
Gso20g1109 675 Gene3D - 27 131 IPR038408 -
Gso20g1109 675 MobiDBLite consensus disorder prediction 652 668 - -
Gso20g1109 675 ProSiteProfiles Gnk2-homologous domain profile. 138 245 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1109 Gso-Chr20 40896257 40899708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1109 4 675 Receptor kinase-like Gene Family AT4G05200 50.000 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1109 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1109 - - gmx:113000773 1256.89