Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1108 ATGGTCTCTCCAAAAGTACTTTCTTTCTTTTTTCTACTTTTTACTCTGATATCTCAAGCTACTGCCAAGCCAGAATACCCATACGCTGTTTGCATCACAGAAGGTGGAGATTATGCCCCTAATAGCACCTACCAGACCAACCTCAATACCGTTCTTTCAAGGATCATTTCCACCACACAAAATGATTATGGCTTCTACAATTCCTCCTATGGCCAAGAACCCGACAGAGTCTACGCAAATGGGCTTTGCAGAGGAGACGTTACCCCACATGCTTGCCTTACTTGCCTCAACAATTCTCATTTACTTCTCCTAAAGCAGTGTCCACATCAGAAGCGTGCAATAGGAGGATATGCTGAATGCATGCTGCACTATTCATATCGCTCGGTACTAGGTTACTATGATTCTGATTTCCGGGTCTACTTGCAGAGTAAAACTAATGTAAAAGATTGGGATCAGTACAGTTACGTGCTGATGAAGTTGCTGTCAAGACTAAAAGTGAAAGCTGCAACAACTGATTCCTATCTGAATCGTAAATATGCTTCAGGAAATGCAACAATTCCGGGTTCTCAAACTATATTTGCCGTTGTTCAGTGCGCACCTGACTTGACAGTGGCACAATGCAACGACTGCTTAGATGGTGCCATTTCAGAAATACCAAAATGTTGTAATCACATGTCAGGTGGTGTGGTTATTAAATTCAGGTGTAACTTCAGATACGAGAGCTCTAGGTTTTATGAGCCAACGGCTGATACACTAACACTACAATTGTCACCACTAGAATCTCCATCTCCTTCACCTACACCAGCATCTACAACTGCAAATTACCCAGAGAGTACTTATCATGGAAAAGGCAACAAATCACAAGCTGCAATCGCTAAATATGTTGTGCCTATTGTTGTCTTTGTTGGGTTTCTGATCTTTGTTTGCATCTATTTAAGAGTGAGAAAGCCAACAAAACTGTTTGAGAGTGAAGCTAAGGTTGATGATGAAATTGAGCAAGTAGGGTCATCACTATTTGACTTTGACACCATCAGAGTCGGTACAAACAACTTCTCCCCTGCCAACAAGCTAGGACAAGGTGGATTTGGACCTGTTTACAAGGGGATGCTCTTCAATGAACAAGAAGTAGCAATCAAAAGGTTATCTAGCAATTCTGGCCAAGGAGAAATTGAATTCAAGAATGAAGTGCTATTAATGTCCAGGCTTCAGCATCGAAATTTAGTTAGACTCCTTGGTTTCTGTTTTGAAAGAGAAGAACGACTCCTTGTCTATGAGTTTCTTCCTAATAAAAGCCTTGACTACTTCTTATTTGACCCCATCAAGCGTGCACATTTGGACTGGAAAACACGCTACAAAATAATTGAAGGCATTGCACGTGGCCTTCTTTATCTTCATGAGGATTCTCAGAGGAGGATTATTCACCGTGATCTCAAATTGAGTAATATTCTTTTAGATGCCGATATGAATCCCAAGATTTCAGATTTTGGCTTTGCAAGGCTGTTTAATGTGGATCAAACTCTGTTTAATGCAAGTAAAATTGCAGGAACCTACGGATACATGGCACCTGAGTATGCAAGGCATGGAAAACTCTCAATGAAGTTAGATGTCTTTAGTTTTGGTGTAATAATACTAGAGATTGTAAGTGGCCAAAAGAATGGTGGATTTCGTAATGGAGACAATGTGGAGCATCTATTAAGCATTGCTTGGACAAACTTGAGGAAAGGAACAACAACTAATATTATAGATCCCACCTTAAATAATGCTTTCAGAGATGAAATAGTTAGATGCATTTACATTGGGCTACTTTGTGTTCAAGAAAAGGTTGCTGATAGACCAACAATGGCTTCAGTGGTGCTTATGCTTGAGAGCCACTCTTTTGCTTTACCAGTTCCTTTGCAACCAGCTTATTTTATGAACAACAGTTGTTTATCAGACATCCAGTTTTTGGGGTGCAGTTCTGCGGAAACAGGATCAAATGAACAGAGAAGTAACTCTGCTGATGTATCAGCAAATGAGGCTTCAATTAGTAGTCTATATCCTCGGAAGGAGTATGAGACAATGGTTGCACATGGGTTTAAAAATAAAACTATGGGTTCATTAATTATGGGAGCTTGCCATCAATCTTCTCTTTGTCACATCCCATTCATTCACAATTTCAGGATGGCTGCTATGGCCATAGTTTCTAAAACTTTGCTCTTATTTGTTATTCTCCTTGTCAATATGTCTCTAGCCACAGCACAGCCAAACTTCGTAAAATATTACTGTATTGACAAAAATGGCAACTACACTGCTAACAGCACCTTCCACGCCAATCTCAACACCCTTTTGTCCAACCTCTCTTCCAACACTGAAATTGACTATGGCTTCTACAATTTCTCCAATGGCCAAAACTCTGACAAAGTCAACGTTATTGGGATGTGTAGAGGAGATCTTAAGCCAGAATCTTGCCGAAGTTGCCTCAAGAATTCAAGAATCCTTCTCACACAGCTTTGTCCAAACCAGAAGGAGGCAATTGGGTGGTATGATCAGTGCATGTTGCGCTACTCTACCCGCTCAATATTTGGAATTATGGAATCTGATCCTTGGTATTTGATATGGAACAACAGAAATGCAACAAATGAGGATCAGTATAATGAAGTTGTCGGGGACCTTCTGAGAAGTCTAGGAAACGGAGCTGAAGCAGGTGATTCTCACCGTAAGTATGCTCAAGCAAACAAAACAGGTCCAAACTTTCAAACTGTATATGCTCATGTTCAATGCACACCTGATTTGTCAGAGTTGGAATGCAATCAGTGCTTGTTTATTGCAATATTATATATCCCAAACTACTGTGCTGGTAAGGTACGTTGCAGAATTTTCGAACCTAGTTGTAATCTTAGATTTGACACCACCCCATACTTTGATCCTATTACTACCATGACTGCGCCGCCTTCGCTGACACCGCAACCATTTCCTTCTCCTCCTCCATCCATTCCTGCCAGGTTCAAAAAAGGTATGAGCAAATCAGGGCGAACTGTCATTGCCATAATTATGCCAATTGTCTCCATAAGTACATTTGTCATCTTTACGTGCATGTATTTAACAGGAAGGAATAGGAAGAATTTTGAAAGTGAATCTGAAGCTGAATATGAAATTGAACCAACTGAGACATTACAATTGGACTTCCAAACCATTATAGACGCAACAAATAACTTTGCAGATGCAAATAAGGTTGGACAAGGTGGATTTGGACCAGTCTACAAGGGTAGACTTCCCAATGGCAAAGAAGTTGCTATCAAACGGTTGTCCAGGGGTTCTGGCCAAGGAGATATAGAATTCAAAAATGAACTGCTATTAGTAGCAAAGCTGCAACACCGAAATTTAGTAAGACTATTGGGATTTTGTTTGGAAACAGGAGAAAGGATACTGGTGTACGAGTTTCTTCCCAATAAAAGCCTTGACTACTTCATATTTGATCCAATCAAACGTTTATTTTTGGATTGGGAAAGACGTTACAAGATTATAGAAGGTATTTCTCGAGGTCTTCTTTATCTTCATGAAGATTCAAGACTGCGTATTATTCATCGTGATCTCAAAGCAAGCAACATACTCTTAGACGATGAAATGAATCCTAAGATATCAGATTTTGGCATGGCAAGATTGCTTGTTGCAGATCAAAGTCTCGGAAATACAATTAGAGTTGTTGGAACCGTTGGATATATGGCACCCGAATATGCAATGCATGGACATTTCTCAGTGAAGTCAGATGTTTTTAGTTTTGGTGTACTAGTTCTTGAGATAGTGACTGGACACAGAAATGGTGATATCCATGACAGCGGTTACGTACAACATCTAATAAGTTTTGTATGGAGGAACTGGAGGAAAGAGACTGCCTTAAGTATTGTAGATCAAACACTGAGCAATTATTCTAGAAATGAAATAATGAGATGCATTCATATTGGATTACTGTGTGTTCAAGAAAACTTAGTCAACAGACCAACCATGGCAACCGTTGTAAACATGTTTAGCAGTAACTCTCTCACTCTTCCAGTACCCTCTCAACCTGCATATTCTATGAATGCTAGAGATCCATCGGATACAAGATTAGATGAATCAAGAAACAACTGCATGCAAGCATCATCAAATGAGGCTTCCATTAGTGAGTTAGATCCTCGTTAG 4158 0.399 MVSPKVLSFFFLLFTLISQATAKPEYPYAVCITEGGDYAPNSTYQTNLNTVLSRIISTTQNDYGFYNSSYGQEPDRVYANGLCRGDVTPHACLTCLNNSHLLLLKQCPHQKRAIGGYAECMLHYSYRSVLGYYDSDFRVYLQSKTNVKDWDQYSYVLMKLLSRLKVKAATTDSYLNRKYASGNATIPGSQTIFAVVQCAPDLTVAQCNDCLDGAISEIPKCCNHMSGGVVIKFRCNFRYESSRFYEPTADTLTLQLSPLESPSPSPTPASTTANYPESTYHGKGNKSQAAIAKYVVPIVVFVGFLIFVCIYLRVRKPTKLFESEAKVDDEIEQVGSSLFDFDTIRVGTNNFSPANKLGQGGFGPVYKGMLFNEQEVAIKRLSSNSGQGEIEFKNEVLLMSRLQHRNLVRLLGFCFEREERLLVYEFLPNKSLDYFLFDPIKRAHLDWKTRYKIIEGIARGLLYLHEDSQRRIIHRDLKLSNILLDADMNPKISDFGFARLFNVDQTLFNASKIAGTYGYMAPEYARHGKLSMKLDVFSFGVIILEIVSGQKNGGFRNGDNVEHLLSIAWTNLRKGTTTNIIDPTLNNAFRDEIVRCIYIGLLCVQEKVADRPTMASVVLMLESHSFALPVPLQPAYFMNNSCLSDIQFLGCSSAETGSNEQRSNSADVSANEASISSLYPRKEYETMVAHGFKNKTMGSLIMGACHQSSLCHIPFIHNFRMAAMAIVSKTLLLFVILLVNMSLATAQPNFVKYYCIDKNGNYTANSTFHANLNTLLSNLSSNTEIDYGFYNFSNGQNSDKVNVIGMCRGDLKPESCRSCLKNSRILLTQLCPNQKEAIGWYDQCMLRYSTRSIFGIMESDPWYLIWNNRNATNEDQYNEVVGDLLRSLGNGAEAGDSHRKYAQANKTGPNFQTVYAHVQCTPDLSELECNQCLFIAILYIPNYCAGKVRCRIFEPSCNLRFDTTPYFDPITTMTAPPSLTPQPFPSPPPSIPARFKKGMSKSGRTVIAIIMPIVSISTFVIFTCMYLTGRNRKNFESESEAEYEIEPTETLQLDFQTIIDATNNFADANKVGQGGFGPVYKGRLPNGKEVAIKRLSRGSGQGDIEFKNELLLVAKLQHRNLVRLLGFCLETGERILVYEFLPNKSLDYFIFDPIKRLFLDWERRYKIIEGISRGLLYLHEDSRLRIIHRDLKASNILLDDEMNPKISDFGMARLLVADQSLGNTIRVVGTVGYMAPEYAMHGHFSVKSDVFSFGVLVLEIVTGHRNGDIHDSGYVQHLISFVWRNWRKETALSIVDQTLSNYSRNEIMRCIHIGLLCVQENLVNRPTMATVVNMFSSNSLTLPVPSQPAYSMNARDPSDTRLDESRNNCMQASSNEASISELDPR* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1108 1385 SUPERFAMILY Protein kinase-like (PK-like) 337 644 IPR011009 -
Gso20g1108 1385 ProSiteProfiles Protein kinase domain profile. 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 641 - -
Gso20g1108 1385 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 724 1367 - -
Gso20g1108 1385 Gene3D Phosphorylase Kinase; domain 1 1026 1140 - -
Gso20g1108 1385 MobiDBLite consensus disorder prediction 1346 1385 - -
Gso20g1108 1385 ProSiteProfiles Gnk2-homologous domain profile. 135 244 IPR002902 -
Gso20g1108 1385 Gene3D Phosphorylase Kinase; domain 1 325 426 - -
Gso20g1108 1385 Pfam Salt stress response/antifungal 869 963 IPR002902 -
Gso20g1108 1385 Pfam Salt stress response/antifungal 145 241 IPR002902 -
Gso20g1108 1385 Pfam Salt stress response/antifungal 755 850 IPR002902 -
Gso20g1108 1385 Pfam Salt stress response/antifungal 31 125 IPR002902 -
Gso20g1108 1385 CDD STKc_IRAK 1071 1335 - -
Gso20g1108 1385 CDD STKc_IRAK 357 622 - -
Gso20g1108 1385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Gso20g1108 1385 MobiDBLite consensus disorder prediction 256 279 - -
Gso20g1108 1385 MobiDBLite consensus disorder prediction 1364 1385 - -
Gso20g1108 1385 Pfam Protein kinase domain 354 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 Pfam Protein kinase domain 1067 1268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 SUPERFAMILY Protein kinase-like (PK-like) 1051 1366 IPR011009 -
Gso20g1108 1385 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 641 - -
Gso20g1108 1385 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 724 1367 - -
Gso20g1108 1385 ProSiteProfiles Protein kinase domain profile. 1065 1342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Gso20g1108 1385 Gene3D - 26 128 IPR038408 -
Gso20g1108 1385 Gene3D - 860 966 IPR038408 -
Gso20g1108 1385 Gene3D - 748 852 IPR038408 -
Gso20g1108 1385 Gene3D - 134 244 IPR038408 -
Gso20g1108 1385 Gene3D Transferase(Phosphotransferase) domain 1 427 627 - -
Gso20g1108 1385 Gene3D Transferase(Phosphotransferase) domain 1 1141 1342 - -
Gso20g1108 1385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1186 1198 IPR008271 GO:0004672|GO:0006468
Gso20g1108 1385 ProSiteProfiles Gnk2-homologous domain profile. 750 853 IPR002902 -
Gso20g1108 1385 SMART serkin_6 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 SMART serkin_6 1065 1311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1108 1385 ProSiteProfiles Gnk2-homologous domain profile. 859 966 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1108 Gso-Chr20 40885782 40896145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1108 1 681 Receptor kinase-like Gene Family AT4G21410 44.160 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1108 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1108 - - gsj:114402114 2709.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1108 20 40885782 40896145 Gso10g2261 10 49675407 49678900 GST