Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1107 ATGGCCTTGATTCCTTCCATGATGCTGTTTTCATTTCTTTCTTTCCTTGTCATACTCAAATCTGAAGCCAACAACGACCAGCTACAATTCGTGTACCATTATTGCAACAACAAGTACGGAAACATTACCACCGAAACCTACTCAGACAACCGTAATAACCTTTTGTCCAATATGTATTATGACAAAGAAAATGACTACGGCTTCTACAATTCCTCCTATGGACAAGACCCTGACAAAGTTTACGCCATCGGTTTCTGCAGAGGCGATGTAAATCTAGATAAGTGCCGTAGTTGCCTGGAAAAGTCCGCAGTCCTTCTCAGAGAGCGGTGTCCAGGACAGAAAGAGGGGATCGGGTGGTTTGACGAGTGCATGCTACGCTACACCAACCACTCAATATTTGGTGTCATGGTAACTCAACCTAACAACATCTTGTGCAACACAAAAAACGCCACAAAGGATCCTAGATCGGCTACTGGTTTTGATCAAGTGGTCCACAACCTGTTGAACAAACTGAGAAACAGGACGACGACAGTGGCAGACCCAGAAAGTGATTCCAGTCGAAGTCGCAAGTTCTTCGCTGAAGGAAATGCTCCGGTTCAATCAAGCAATGTGACCATACATGCTCTGATTCAGTGCACACCTGATATTTCTAGTCAAAACTGTACTCGATGCTTGGAGTACGCTATGACGAATATTTCATCTTATTGTGATGGAAAAACGGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGATCTATCCCTTTTTTGAGCCCATAGTCCACCATGCACCACCACCACAACCTGCCACTCAGGTTACCACGACCACTGGGAAAGAAAAGAGCAACCCATCACGAACTATCATTGCTATAGTTGTGCCAGTCGTTGCCGTTGTCGTACTCCTGGTGGCCTTTACCTACAATTATTTAGGAGCGAGAAGACGAAGACAAAAACCTTTTCAAAGTGAAGGAGGCGAAGGTGAACTTGATAATGACATTAAAATAGACGAGTTGTTGCAATTTGACTTTGCAACCATCAAATTTGCAACTAATAACTTCTCTGATGCAAATAAGCTTGGCCAAGGTGGATTTGGAATTGTTTATAAGGGTACGCTCTCTGATGGACAAGAAATAGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGAATGAAATTCTGCTAACAGGGAAGCTTCAACACCGAAACTTAGTTAGACTGCTTGGCTTTTGTTTTTCAAGAAGAGAAAGGTTATTGATATATGAATTCGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAAACAATCGTGTGAATTTGAATTGGGAAAGACGCTATAATATTATAAGGGGTATTGCTCGAGGTCTTCTTTACCTTCGTGAAGATTCTCGATTACAAATTGTTCATCGTGATCTCAAAACAAGTAACATTTTGTTAGATGAAGAGTTGAACCCTAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTCAAGCCAGTACAAATACAATTGTCGGGACCTTTGGATATATGGCTCCTGAGTACATTAAATATGGACAGTTTTCAGTCAAGTCAGATGTCTTTAGTTTTGGCGTAATGATTCTGGAAATTGTATGCGGACAAAGAAACAGTGAGATTCGTGGTAGCGAGGAAAATGCACAAGATCTATTAAGCTTTGCATGGAAAAATTGGAGGGGAGGGACAGTTTCAAATATTGTAGATGACACATTAAAGGATTATTCTTGGAATGAAATAAGGAGATGCATTCACATTGGATTACTGTGTGTACAGGAAGATATAGCTGATAGACCAACTATGAATACCGTTTTACTGATGCTTAACAGTGACTCTTTCCCACTTGCTAAACCTTCTGAACCTGCATTTTTAATGCGTGATAAGAGTTCTTTGCCTACGGCTATGCTGTCTGGTGGGCAACATTCAGAGGTAACAAGGTCAGGTTATTCAGGAAGTCAATCTGCTCAAGAATCATCAATTATGGCTCCAATCACCGAGCCATATCCTCGTTAG 2067 0.4059 MALIPSMMLFSFLSFLVILKSEANNDQLQFVYHYCNNKYGNITTETYSDNRNNLLSNMYYDKENDYGFYNSSYGQDPDKVYAIGFCRGDVNLDKCRSCLEKSAVLLRERCPGQKEGIGWFDECMLRYTNHSIFGVMVTQPNNILCNTKNATKDPRSATGFDQVVHNLLNKLRNRTTTVADPESDSSRSRKFFAEGNAPVQSSNVTIHALIQCTPDISSQNCTRCLEYAMTNISSYCDGKTGGRYLGPSCSVRYEIYPFFEPIVHHAPPPQPATQVTTTTGKEKSNPSRTIIAIVVPVVAVVVLLVAFTYNYLGARRRRQKPFQSEGGEGELDNDIKIDELLQFDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGKLQHRNLVRLLGFCFSRRERLLIYEFVPNKSLDYFIFDPNNRVNLNWERRYNIIRGIARGLLYLREDSRLQIVHRDLKTSNILLDEELNPKISDFGMARLFEINQTQASTNTIVGTFGYMAPEYIKYGQFSVKSDVFSFGVMILEIVCGQRNSEIRGSEENAQDLLSFAWKNWRGGTVSNIVDDTLKDYSWNEIRRCIHIGLLCVQEDIADRPTMNTVLLMLNSDSFPLAKPSEPAFLMRDKSSLPTAMLSGGQHSEVTRSGYSGSQSAQESSIMAPITEPYPR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1107 688 Gene3D Transferase(Phosphotransferase) domain 1 431 632 - -
Gso20g1107 688 ProSiteProfiles Gnk2-homologous domain profile. 138 258 IPR002902 -
Gso20g1107 688 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1107 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso20g1107 688 Pfam Salt stress response/antifungal 145 255 IPR002902 -
Gso20g1107 688 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Gso20g1107 688 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Gso20g1107 688 Gene3D - 139 258 IPR038408 -
Gso20g1107 688 Gene3D - 27 131 IPR038408 -
Gso20g1107 688 SMART serkin_6 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1107 688 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Gso20g1107 688 SUPERFAMILY Protein kinase-like (PK-like) 339 626 IPR011009 -
Gso20g1107 688 MobiDBLite consensus disorder prediction 652 679 - -
Gso20g1107 688 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 688 - -
Gso20g1107 688 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Gso20g1107 688 ProSiteProfiles Protein kinase domain profile. 355 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1107 688 MobiDBLite consensus disorder prediction 652 688 - -
Gso20g1107 688 CDD STKc_IRAK 361 627 - -
Gso20g1107 688 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1107 Gso-Chr20 40870590 40875696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1107 35 642 Receptor kinase-like Gene Family AT4G38830 46.624 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1107 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1107 - - gmx:100789002 1337.78