Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1106 ATGGCTGCAGTTTCTTTTAGACTCCTTTTCTTTCTTTGTTGTCTCTCGGTCATAATCATATCACGAGCCAGCGCTCAGACATACTGTGATAACCACAAAGGCAACTACACAATAAACAGCACCTATCACAACAACCTCAACACCCTCTTATCCACTTTCTCTTCCCACACAGATATCTACTATGGTTTCTACAATTTCTCGTATGGCCAAGACCCAGACAAAGTATACGCCATTGGGCTCTGCAGAGGCGATCAAAACCAGGATGATTGCCTCGCGTGCCTCGACGATGCCAGAGCCAACTTCACACAGCTTTGTCCAAACCAGAAAGAGGCAATTAATTGGGATGGAGAGTGCATGTTACGCTACTCTAACCGCTCAATATTTGGCATCATGGAAAATGAACCTTTTGTGGAAACCGTGTTAACGATGAATGTAACGGGTCCAGTGGACCAATTCAATGAAGCGCTGCAGAGCCTGATGAGGAATCTAACAAGCACAGCTGCATCAGGTGACTCTCGTCGTAAGTATGGTACAGCTAGTACACATGCTCCAAATTTTCAAACCATATACGGTTATGCACAGTGCACGCCTGATTTGTCCTTGGAAGATTGCACCAATTGCTTGGGTGAAGCTATCGCAGAAATCCCAAGGTGTTGTAGTGGCAAGGCTGGAGGCAATGTTTTGAAACCCAGTTGTAGAATTAGATTTGACCCCTACAACTTCTTCGGACCTACGATCCCTCTACCATCACCGTCCCCCAATTCACAAGGAAAGAGCAAGACATCACGAACTATCATAGCCATAGTAGTGCCTGCTGCGAGTGTTGTTTTGGTGGTCAGTCTTTTCTGCATCTATCTAAGAGCTAGGAAGCCAAGAAAAAAAATTGAAAGTGAGGTTAAAGGAGAAGATAGTCACGAAGATGAAATTACATTTGCTGAGTCATTGCAATTCAATTTTGATACCATTCGAGCTGCTACAAATGAATTCGCTGATTCTAATAAACTTGGACAAGGCGGGTTTGGAGCTGTTTACAGAGGTCAGCTTTCTAATGGACAAGAGATTGCTGTCAAAAGGTTGTCAAGGGATTCTGGGCAAGGAAATATGGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAAGCTACTTGGTTTCTGCCTGGAAGGAAGAGAAAGGCTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCCATAAAGAAAGCACAACTGGATTGGCAAAGGCGCTACAATATCATTGGAGGTATTGCTCGAGGCATTCTTTACCTCCATGAGGATTCTCGACTTCGTATTATACATCGTGACCTCAAAGCAAGCAACATTCTCTTAGATGAAGAAATGAATCCTAAGATATCAGATTTTGGAATGGCAAGATTGGTTCACATGGATGAGACTCAAGGAAATACAAGTAGAATTGTTGGAACTTATGGATATATGGCACCCGAGTATGTATTATATGGTCAGTTTTCAGCAAAATCGGATGTTTTTAGTTTTGGTGTATTGGTTCTTGAGATTATAAGTGGCCAGAAAAACAGCGGCATTCGTCATGGGGAGAACGTGGAGCATCTATTGAGCTTTGCATGGCGAAACTGGAGGGATGGAACAACTACAGATATTATAGATCCCACATTAAATGATGGTTCGCGAAATGAAATAATGAGATGCATCCACATTGGATTATTATGTGCTCAAGAAAATGTGACTGCCAGGCCAACCATGGCTTCTGTTGTGCTCATGCTTAATAGCTATTCTCTCACTCTCCCGTTACCTTCAGAAACTGCATTTGTTTTAGATAGTAACATTAGAAGCTTCCCAGACATGCTTTTATCAGAGCATAATTCAAGGGAAACAAGATCAAGTGAAACAGCAATTAAATCAACTCAAAAATCGATAAATGAGGCATCAATTACTGAGCTATACCCTCGCTAG 1986 0.4174 MAAVSFRLLFFLCCLSVIIISRASAQTYCDNHKGNYTINSTYHNNLNTLLSTFSSHTDIYYGFYNFSYGQDPDKVYAIGLCRGDQNQDDCLACLDDARANFTQLCPNQKEAINWDGECMLRYSNRSIFGIMENEPFVETVLTMNVTGPVDQFNEALQSLMRNLTSTAASGDSRRKYGTASTHAPNFQTIYGYAQCTPDLSLEDCTNCLGEAIAEIPRCCSGKAGGNVLKPSCRIRFDPYNFFGPTIPLPSPSPNSQGKSKTSRTIIAIVVPAASVVLVVSLFCIYLRARKPRKKIESEVKGEDSHEDEITFAESLQFNFDTIRAATNEFADSNKLGQGGFGAVYRGQLSNGQEIAVKRLSRDSGQGNMEFKNEVLLVAKLQHRNLVKLLGFCLEGRERLLIYEFVPNKSLDYFIFDPIKKAQLDWQRRYNIIGGIARGILYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLVHMDETQGNTSRIVGTYGYMAPEYVLYGQFSAKSDVFSFGVLVLEIISGQKNSGIRHGENVEHLLSFAWRNWRDGTTTDIIDPTLNDGSRNEIMRCIHIGLLCAQENVTARPTMASVVLMLNSYSLTLPLPSETAFVLDSNIRSFPDMLLSEHNSRETRSSETAIKSTQKSINEASITELYPR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1106 661 Gene3D Transferase(Phosphotransferase) domain 1 405 606 - -
Gso20g1106 661 Gene3D - 135 241 IPR038408 -
Gso20g1106 661 Gene3D - 22 126 IPR038408 -
Gso20g1106 661 SUPERFAMILY Protein kinase-like (PK-like) 310 599 IPR011009 -
Gso20g1106 661 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Gso20g1106 661 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Gso20g1106 661 CDD STKc_IRAK 335 600 - -
Gso20g1106 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Gso20g1106 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 4 644 - -
Gso20g1106 661 ProSiteProfiles Gnk2-homologous domain profile. 133 241 IPR002902 -
Gso20g1106 661 SMART serkin_6 329 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1106 661 ProSiteProfiles Protein kinase domain profile. 329 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso20g1106 661 Gene3D Phosphorylase Kinase; domain 1 291 404 - -
Gso20g1106 661 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Gso20g1106 661 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Gso20g1106 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 644 - -
Gso20g1106 661 Pfam Protein tyrosine and serine/threonine kinase 333 596 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1106 Gso-Chr20 40865131 40868795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1106 7 661 Receptor kinase-like Gene Family AT4G21410 47.467 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso20g1106 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1106 - - gmx:100788472 1297.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1106 20 40865131 40868795 Gso10g2262 10 49680087 49689851 GST